Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

18355783 .. 18359000

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTCCTCTTACTCTCTCCGTTGATGTGAAGAGCTCTTCAGCGACCTCTCATGATGTTTCGAAGAGGGTAATGCAGAGTTCACAGCTCAAAATAAACAAAGGCTTTTTTGCATCTGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTATACCCAATTGATACTATTAAGACTAGACTTCAGGCAGCTCGTGGAGGTGGAAAAATTGTTTTGAAGGGTCTTTATTCAGGATTAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTTGGAGTTTACGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCAAAGAATGCAGACCGGACAGTTTACATCAGCTCCCAGTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGGTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAGGGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGATCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAATACGGTTAAAGAAACCAAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

34.86

Weight (kDa)

9.68

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	54 - 127	1.1e-11	Mitochondrial carrier protein
Mito_carr	PF00153	132 - 212	4.2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	227 - 313	1.1e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	946
AccII	CGCG	2 cut(s)	659, 661
AciI	CCGC	3 cut(s)	154, 657, 737
AclWI	GGATC	3 cut(s)	671, 781, 898
AcuI	CTGAAG	3 cut(s)	24, 230, 398
AcyI	GRCGYC	1 cut(s)	943
AfaI	GTAC	1 cut(s)	187
AgeI	ACCGGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	206, 280, 812
Alw21I	GWGCWC	4 cut(s)	38, 715, 838, 920
Alw26I	GTCTC	2 cut(s)	563, 934
AlwI	GGATC	3 cut(s)	671, 781, 898
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	911
AoxI	GGCC	2 cut(s)	426, 860
ApeKI	GCWGC	3 cut(s)	251, 443, 631
AseI	ATTAAT	1 cut(s)	761
AsiGI	ACCGGT	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	404, 661
AspS9I	GGNCC	3 cut(s)	426, 576, 860
AsuHPI	GGTGA	2 cut(s)	404, 721
AsuII	TTCGAA	2 cut(s)	62, 526
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	1 cut(s)	576
BanII	GRGCYC	2 cut(s)	38, 838
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	4 cut(s)	38, 715, 838, 920
BbvI	GCAGC	3 cut(s)	263, 430, 643
BccI	CCATC	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	563, 934
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	420, 465
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	252, 444, 632, 657
BlsI	GCNGC	4 cut(s)	253, 445, 633, 658
Bme18I	GGWCC	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	3 cut(s)	426, 576, 860
BmiI	GGNNCC	2 cut(s)	6, 427
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	4 cut(s)	122, 455, 545, 595
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	213
Bpu14I	TTCGAA	2 cut(s)	62, 526
BsaHI	GRCGYC	1 cut(s)	943
BsaI	GGTCTC	1 cut(s)	563
BsaWI	WCCGGW	3 cut(s)	494, 573, 719
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 496, 526
Bse118I	RCCGGY	2 cut(s)	325, 573
Bse1I	ACTGG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	263, 430, 643
Bsh1236I	CGCG	2 cut(s)	659, 661
BshFI	GGCC	2 cut(s)	428, 862
BshTI	ACCGGT	1 cut(s)	573
BsiHKAI	GWGCWC	4 cut(s)	38, 715, 838, 920
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	4 cut(s)	326, 495, 574, 720
BslFI	GGGAC	1 cut(s)	930
BsmAI	GTCTC	2 cut(s)	563, 934
BsmBI	CGTCTC	1 cut(s)	934
BsmFI	GGGAC	1 cut(s)	930
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	428, 862
Bso31I	GGTCTC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	911
Bsp119I	TTCGAA	2 cut(s)	62, 526
Bsp1286I	GDGCHC	4 cut(s)	38, 715, 838, 920
Bsp143I	GATC	4 cut(s)	391, 676, 773, 890
BspACI	CCGC	3 cut(s)	154, 657, 737
BspANI	GGCC	2 cut(s)	428, 862
BspCNI	CTCAG	1 cut(s)	673
BspFNI	CGCG	2 cut(s)	659, 661
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	6, 427
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	3 cut(s)	671, 781, 898
BspQI	GCTCTTC	2 cut(s)	26, 43
BspT104I	TTCGAA	2 cut(s)	62, 526
BspTNI	GGTCTC	1 cut(s)	563
BsrFI	RCCGGY	2 cut(s)	325, 573
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	2 cut(s)	325, 573
BssMI	GATC	4 cut(s)	391, 676, 773, 890
BssNI	GRCGYC	1 cut(s)	943
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	4 cut(s)	501, 615, 806, 955
Bst6I	CTCTTC	3 cut(s)	26, 43, 59
BstACI	GRCGYC	1 cut(s)	943
BstAPI	GCANNNNNTGC	2 cut(s)	373, 487
BstBI	TTCGAA	2 cut(s)	62, 526
BstDEI	CTNAG	3 cut(s)	671, 681, 921
BstFNI	CGCG	2 cut(s)	659, 661
BstHHI	GCGC	2 cut(s)	404, 661
BstKTI	GATC	4 cut(s)	394, 679, 776, 893
BstMAI	GTCTC	2 cut(s)	563, 934
BstMBI	GATC	4 cut(s)	391, 676, 773, 890
BstMWI	GCNNNNNNNGC	5 cut(s)	373, 487, 518, 595, 667
BstSFI	CTRYAG	2 cut(s)	420, 465
BstUI	CGCG	2 cut(s)	659, 661
BstV1I	GCAGC	3 cut(s)	263, 430, 643
BstV2I	GAAGAC	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	428, 862
BtsIMutI	CAGTG	1 cut(s)	523
CaiI	CAGNNNCTG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	2 cut(s)	404, 661
Cfr10I	RCCGGY	2 cut(s)	325, 573
Cfr13I	GGNCC	3 cut(s)	426, 576, 860
Csp6I	GTAC	1 cut(s)	186
CspAI	ACCGGT	1 cut(s)	573
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	1 cut(s)	53
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	3 cut(s)	671, 681, 921
DpnI	GATC	4 cut(s)	393, 678, 775, 892
DpnII	GATC	4 cut(s)	391, 676, 773, 890
Eam1104I	CTCTTC	3 cut(s)	26, 43, 59
EarI	CTCTTC	3 cut(s)	26, 43, 59
Ecl136II	GAGCTC	2 cut(s)	36, 836
Eco24I	GRGCYC	2 cut(s)	38, 838
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	2 cut(s)	36, 836
Eco57I	CTGAAG	3 cut(s)	24, 230, 398
Eco88I	CYCGRG	1 cut(s)	911
EcoICRI	GAGCTC	2 cut(s)	36, 836
EcoT38I	GRGCYC	2 cut(s)	38, 838
Esp3I	CGTCTC	1 cut(s)	934
FaeI	CATG	1 cut(s)	56
FaiI	YATR	9 cut(s)	54, 176, 217, 564, 611, 623, 625, 627, 648
FaqI	GGGAC	1 cut(s)	930
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	252, 444, 632, 657
FriOI	GRGCYC	2 cut(s)	38, 838
Fsp4HI	GCNGC	4 cut(s)	252, 444, 632, 657
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	2 cut(s)	403, 660
GluI	GCNGC	4 cut(s)	252, 444, 632, 657
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	428, 862
HapII	CCGG	4 cut(s)	326, 495, 574, 720
HhaI	GCGC	2 cut(s)	404, 661
Hin1I	GRCGYC	1 cut(s)	943
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	402, 659
HinP1I	GCGC	2 cut(s)	402, 659
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	2 cut(s)	454, 795
HpaII	CCGG	4 cut(s)	326, 495, 574, 720
HphI	GGTGA	2 cut(s)	404, 721
Hpy166II	GTNNAC	5 cut(s)	83, 352, 437, 504, 802
Hpy188I	TCNGA	2 cut(s)	453, 717
Hpy188III	TCNNGA	5 cut(s)	53, 294, 389, 680, 913
Hpy8I	GTNNAC	5 cut(s)	83, 352, 437, 504, 802
HpyAV	CCTTC	3 cut(s)	274, 589, 824
HpyCH4III	ACNGT	4 cut(s)	501, 615, 806, 955
HpyCH4IV	ACGT	1 cut(s)	943
HpyF10VI	GCNNNNNNNGC	5 cut(s)	373, 487, 518, 595, 667
HpyF3I	CTNAG	3 cut(s)	671, 681, 921
HpySE526I	ACGT	1 cut(s)	943
Hsp92I	GRCGYC	1 cut(s)	943
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	402, 659
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	391, 676, 773, 890
LguI	GCTCTTC	2 cut(s)	26, 43
LmnI	GCTCC	5 cut(s)	10, 517, 722, 833, 841
Lsp1109I	GCAGC	3 cut(s)	263, 430, 643
LweI	GCATC	4 cut(s)	122, 455, 545, 595
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	4 cut(s)	393, 678, 775, 892
MboI	GATC	4 cut(s)	391, 676, 773, 890
MboII	GAAGA	7 cut(s)	30, 43, 76, 142, 143, 391, 889
MfeI	CAATTG	2 cut(s)	222, 816
MhlI	GDGCHC	4 cut(s)	38, 715, 838, 920
MluCI	AATT	3 cut(s)	222, 270, 816
MmeI	TCCRAC	1 cut(s)	325
MseI	TTAA	7 cut(s)	120, 234, 398, 750, 761, 848, 957
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	4 cut(s)	326, 495, 574, 720
MunI	CAATTG	2 cut(s)	222, 816
Mva1269I	GAATGC	1 cut(s)	492
MvnI	CGCG	2 cut(s)	659, 661
MwoI	GCNNNNNNNGC	5 cut(s)	373, 487, 518, 595, 667
NdeII	GATC	4 cut(s)	391, 676, 773, 890
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	6, 427
NmuCI	GTSAC	1 cut(s)	727
NspV	TTCGAA	2 cut(s)	62, 526
PaeR7I	CTCGAG	1 cut(s)	911
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	2 cut(s)	26, 43
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	454, 795
PinAI	ACCGGT	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	253, 445, 633, 658
PshBI	ATTAAT	1 cut(s)	761
Psp124BI	GAGCTC	2 cut(s)	38, 838
PspN4I	GGNNCC	2 cut(s)	6, 427
PspPI	GGNCC	3 cut(s)	426, 576, 860
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SacI	GAGCTC	2 cut(s)	38, 838
SapI	GCTCTTC	2 cut(s)	26, 43
SaqAI	TTAA	7 cut(s)	120, 234, 398, 750, 761, 848, 957
SatI	GCNGC	4 cut(s)	252, 444, 632, 657
Sau3AI	GATC	4 cut(s)	391, 676, 773, 890
Sau96I	GGNCC	3 cut(s)	426, 576, 860
SduI	GDGCHC	4 cut(s)	38, 715, 838, 920
SfaNI	GCATC	4 cut(s)	122, 455, 545, 595
SfcI	CTRYAG	2 cut(s)	420, 465
Sfr274I	CTCGAG	1 cut(s)	911
SfuI	TTCGAA	2 cut(s)	62, 526
SinI	GGWCC	1 cut(s)	576
SlaI	CTCGAG	1 cut(s)	911
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	3 cut(s)	222, 270, 816
SsiI	CCGC	3 cut(s)	154, 657, 737
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	2 cut(s)	38, 838
TaaI	ACNGT	4 cut(s)	501, 615, 806, 955
TaiI	ACGT	1 cut(s)	946
TaqI	TCGA	4 cut(s)	62, 457, 526, 912
TasI	AATT	3 cut(s)	222, 270, 816
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	454, 795
Tru1I	TTAA	7 cut(s)	120, 234, 398, 750, 761, 848, 957
Tru9I	TTAA	7 cut(s)	120, 234, 398, 750, 761, 848, 957
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	3 cut(s)	251, 443, 631
Tsp45I	GTSAC	1 cut(s)	727
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	576
VspI	ATTAAT	1 cut(s)	761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XhoI	CTCGAG	1 cut(s)	911
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.