Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002009.1

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

151507 .. 161496

Gene Structure 9990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002009.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgatggtggagagttatttggcctttggaagtcaagaatctgtcggagctcgtttggtcgtgagtactaccacggcgaccaacctgtgttgcagtgaagattgtggttttagatctaaggttctctggtattatcgggccgcaatgggtcctcttactctggcagtcaattcggagagctttgccggagcttcttcatcagatgcatgtagcaagaaatttcagaatgttcctatggcaaagcggaagtcttttgcatctgtcagcatgcaggacgataagccatttgatttcttacgtactttatttgagggtgttatagcaggaggtacagctggtgtggttgttgaaacagctttatatcccattgatactataaagacaagattgcaggctgctcgtggtggagggaaaatagtcttgaagggactttattctggattggctggaaatcttgctggtgtattaccggcttctgcaatttttgttggagtttatgaacctacaaagcagaaattgttaaagatgtttcctgaaaatctaagcgctttcgctcattttgcaaagagagagctcaacgatcctgagaatgctataattggagcttttgcaggtgcattaactggagctataaccactccccttgatgtgattaaaaccagactaatggtacagggatctgccaaccagtacaaaggaattgttgactgtgttcagactattgtgagggaagaaggacctcccgctcttttgaagggtattggaccaagagtgctgtggatagggattggcggttcaatcttttttggtgttctcgagagaacaaagcgcttacttgctcagagacgaccaacagttggtgaagacacgaagcaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

293

Amino Acids

31.31

Weight (kDa)

9.25

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	857
AccBSI	CCGCTC	1 cut(s)	746
AciI	CCGC	4 cut(s)	141, 244, 744, 792
AclWI	GGATC	2 cut(s)	575, 685
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	5 cut(s)	67, 301, 331, 672, 692
AfeI	AGCGCT	2 cut(s)	547, 830
AfiI	CCNNNNNNNGG	1 cut(s)	857
AgsI	TTSAA	4 cut(s)	350, 424, 754, 798
AloI	GAACNNNNNNTCC	2 cut(s)	778, 810
AluBI	AGCT	8 cut(s)	50, 180, 191, 335, 356, 574, 605, 629
AluI	AGCT	8 cut(s)	50, 180, 191, 335, 356, 574, 605, 629
Alw21I	GWGCWC	2 cut(s)	52, 576
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	2 cut(s)	575, 685
Ama87I	CYCGRG	1 cut(s)	815
Aor51HI	AGCGCT	2 cut(s)	547, 830
AoxI	GGCC	2 cut(s)	21, 138
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspLEI	GCGC	2 cut(s)	548, 831
AspS9I	GGNCC	4 cut(s)	138, 149, 737, 764
AsuHPI	GGTGA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	815
AvaII	GGWCC	3 cut(s)	149, 737, 764
BanII	GRGCYC	2 cut(s)	52, 576
BauI	CACGAG	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	52, 576
BbvI	GCAGC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	4 cut(s)	153, 187, 380, 414
BcoDI	GTCTC	1 cut(s)	838
BfoI	RGCGCY	2 cut(s)	549, 832
BfuAI	ACCTGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	2 cut(s)	141, 396
BlsI	GCNGC	2 cut(s)	142, 397
BmcAI	AGTACT	1 cut(s)	67
Bme18I	GGWCC	3 cut(s)	149, 737, 764
BmeT110I	CYCGRG	1 cut(s)	815
BmgT120I	GGNCC	4 cut(s)	138, 149, 737, 764
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	2 cut(s)	193, 266
BpiI	GAAGAC	1 cut(s)	870
BpmI	CTGGAG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	857
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	628, 688
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	857
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	576, 854
BseNI	ACTGG	2 cut(s)	628, 688
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	2 cut(s)	23, 140
BsiHKAI	GWGCWC	2 cut(s)	52, 576
BsiHKCI	CYCGRG	1 cut(s)	815
BsiSI	CCGG	2 cut(s)	186, 470
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	857
BsmAI	GTCTC	1 cut(s)	838
BsmBI	CGTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	23, 140
BsoBI	CYCGRG	1 cut(s)	815
Bsp1286I	GDGCHC	2 cut(s)	52, 576
Bsp143I	GATC	3 cut(s)	113, 580, 677
BspACI	CCGC	4 cut(s)	141, 244, 744, 792
BspANI	GGCC	2 cut(s)	23, 140
BspCNI	CTCAG	2 cut(s)	577, 853
BspLI	GGNNCC	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	575, 685
BsrBI	CCGCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	628, 688
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	113, 580, 677
BssSI	CACGAG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	710, 856
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	269, 393
BstDEI	CTNAG	4 cut(s)	117, 542, 585, 840
BstDSI	CCRYGG	1 cut(s)	72
BstH2I	RGCGCY	2 cut(s)	549, 832
BstHHI	GCGC	2 cut(s)	548, 831
BstKTI	GATC	3 cut(s)	116, 583, 680
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	3 cut(s)	113, 580, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNSI	RCATGY	2 cut(s)	210, 271
BstSNI	TACGTA	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	2 cut(s)	113, 677
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	2 cut(s)	113, 677
BsuRI	GGCC	2 cut(s)	23, 140
BtgI	CCRYGG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	269, 393
CfoI	GCGC	2 cut(s)	548, 831
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	4 cut(s)	138, 149, 737, 764
Csp6I	GTAC	5 cut(s)	66, 300, 330, 671, 691
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	2 cut(s)	207, 268
CviQI	GTAC	5 cut(s)	66, 300, 330, 671, 691
DdeI	CTNAG	4 cut(s)	117, 542, 585, 840
DpnI	GATC	3 cut(s)	115, 582, 679
DpnII	GATC	3 cut(s)	113, 580, 677
Ecl136II	GAGCTC	2 cut(s)	50, 574
Eco105I	TACGTA	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	52, 576
Eco47I	GGWCC	3 cut(s)	149, 737, 764
Eco47III	AGCGCT	2 cut(s)	547, 830
Eco53kI	GAGCTC	2 cut(s)	50, 574
Eco88I	CYCGRG	1 cut(s)	815
EcoICRI	GAGCTC	2 cut(s)	50, 574
EcoO109I	RGGNCCY	2 cut(s)	149, 737
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	2 cut(s)	52, 576
Esp3I	CGTCTC	1 cut(s)	838
FaeI	CATG	2 cut(s)	210, 271
FaiI	YATR	9 cut(s)	208, 236, 269, 320, 361, 377, 498, 596, 632
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	2 cut(s)	206, 267
FauI	CCCGC	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	141, 396
FriOI	GRGCYC	2 cut(s)	52, 576
Fsp4HI	GCNGC	2 cut(s)	141, 396
GlaI	GCGC	2 cut(s)	547, 830
GluI	GCNGC	2 cut(s)	141, 396
GsuI	CTGGAG	1 cut(s)	645
HaeII	RGCGCY	2 cut(s)	549, 832
HaeIII	GGCC	2 cut(s)	23, 140
HapII	CCGG	2 cut(s)	186, 470
HhaI	GCGC	2 cut(s)	548, 831
Hin1II	CATG	2 cut(s)	210, 271
Hin6I	GCGC	2 cut(s)	546, 829
HinP1I	GCGC	2 cut(s)	546, 829
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	2 cut(s)	186, 470
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	6 cut(s)	47, 175, 202, 225, 717, 843
Hpy188III	TCNNGA	8 cut(s)	35, 61, 421, 438, 533, 584, 815, 817
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	418, 728, 748
HpyCH4III	ACNGT	2 cut(s)	710, 856
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	9 cut(s)	93, 206, 257, 271, 391, 479, 563, 611, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	4 cut(s)	117, 542, 585, 840
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	210, 271
HspAI	GCGC	2 cut(s)	546, 829
Kzo9I	GATC	3 cut(s)	113, 580, 677
LmnI	GCTCC	4 cut(s)	47, 188, 602, 626
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	193, 266
MaeII	ACGT	1 cut(s)	298
MalI	GATC	3 cut(s)	115, 582, 679
MbiI	CCGCTC	1 cut(s)	746
MboI	GATC	3 cut(s)	113, 580, 677
MboII	GAAGA	4 cut(s)	110, 186, 743, 875
MflI	RGATCY	2 cut(s)	113, 677
MhlI	GDGCHC	2 cut(s)	52, 576
MluCI	AATT	6 cut(s)	169, 218, 480, 515, 597, 699
MmeI	TCCRAC	2 cut(s)	25, 469
MnlI	CCTC	6 cut(s)	162, 304, 320, 401, 720, 750
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	3 cut(s)	521, 620, 654
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	2 cut(s)	186, 470
Mva1269I	GAATGC	1 cut(s)	595
MwoI	GCNNNNNNNGC	1 cut(s)	560
NdeII	GATC	3 cut(s)	113, 580, 677
NlaIII	CATG	2 cut(s)	210, 271
NlaIV	GGNNCC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	2 cut(s)	210, 271
PaeI	GCATGC	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	815
PaqCI	CACCTGC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	857
PkrI	GCNGC	2 cut(s)	142, 397
Ppu21I	YACGTR	1 cut(s)	299
PpuMI	RGGWCCY	2 cut(s)	149, 737
Psp124BI	GAGCTC	2 cut(s)	52, 576
Psp5II	RGGWCCY	2 cut(s)	149, 737
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	4 cut(s)	138, 149, 737, 764
PspPPI	RGGWCCY	2 cut(s)	149, 737
PsuI	RGATCY	2 cut(s)	113, 677
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	5 cut(s)	67, 301, 331, 672, 692
RsaNI	GTAC	5 cut(s)	66, 300, 330, 671, 691
SacI	GAGCTC	2 cut(s)	52, 576
SaqAI	TTAA	3 cut(s)	521, 620, 654
SatI	GCNGC	2 cut(s)	141, 396
Sau3AI	GATC	3 cut(s)	113, 580, 677
Sau96I	GGNCC	4 cut(s)	138, 149, 737, 764
ScaI	AGTACT	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	52, 576
SfaNI	GCATC	2 cut(s)	193, 266
Sfr274I	CTCGAG	1 cut(s)	815
SinI	GGWCC	3 cut(s)	149, 737, 764
SlaI	CTCGAG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SnaBI	TACGTA	1 cut(s)	299
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	6 cut(s)	169, 218, 480, 515, 597, 699
SsiI	CCGC	4 cut(s)	141, 244, 744, 792
SstI	GAGCTC	2 cut(s)	52, 576
TaaI	ACNGT	2 cut(s)	710, 856
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	816
TasI	AATT	6 cut(s)	169, 218, 480, 515, 597, 699
TatI	WGTACW	2 cut(s)	65, 690
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	521, 620, 654
Tru9I	TTAA	3 cut(s)	521, 620, 654
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	186, 513
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	149, 737, 764
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	2 cut(s)	210, 271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XhoI	CTCGAG	1 cut(s)	815
ZrmI	AGTACT	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.