Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

30227766 .. 30233117

Gene Structure 5352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTATGCAAGATGATGTGGCATAGTTCTAAACCATTGGATTCCATTGATGGTGCAGATTTTATGAAATTCATAAAAACTGCAGAGGAGCTCTATCCGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCCGCCTCTGCTGCTGTTTGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGCTATAACCACTCCCCTTGATGTGATTAAAACTAGACTAATTGTACAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCCCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCAGTTCAATCTTTTTTGGTGTTCTCGAAAGAACAAAGCGCTTACTTGCTCAGAGACGACCAACAGTTGGTGAAGACGCGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

201

Amino Acids

21.9

Weight (kDa)

9.26

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	103 - 189	1.4e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccII	CGCG	1 cut(s)	593
AciI	CCGC	3 cut(s)	228, 284, 468
AclWI	GGATC	2 cut(s)	299, 409
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	2 cut(s)	396, 416
AfeI	AGCGCT	2 cut(s)	175, 554
AfiI	CCNNNNNNNGG	2 cut(s)	478, 581
AgsI	TTSAA	3 cut(s)	271, 478, 522
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	5 cut(s)	91, 182, 298, 329, 353
AluI	AGCT	5 cut(s)	91, 182, 298, 329, 353
Alw21I	GWGCWC	2 cut(s)	93, 300
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	2 cut(s)	299, 409
Aor51HI	AGCGCT	2 cut(s)	175, 554
ApeKI	GCWGC	2 cut(s)	236, 254
ApoI	RAATTY	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	176, 555
AspS9I	GGNCC	2 cut(s)	461, 488
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	461, 488
BanII	GRGCYC	2 cut(s)	93, 300
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	93, 300
BbvI	GCAGC	2 cut(s)	223, 241
BccI	CCATC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	2 cut(s)	177, 556
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	237, 255, 285
BlsI	GCNGC	3 cut(s)	238, 256, 286
Bme18I	GGWCC	2 cut(s)	461, 488
BmgT120I	GGNCC	2 cut(s)	461, 488
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 581
Bse1I	ACTGG	2 cut(s)	352, 412
BseGI	GGATG	2 cut(s)	210, 224
BseLI	CCNNNNNNNGG	2 cut(s)	478, 581
BseMII	CTCAG	2 cut(s)	300, 578
BseNI	ACTGG	2 cut(s)	352, 412
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	223, 241
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	593
BsiHKAI	GWGCWC	2 cut(s)	93, 300
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	478, 581
BsmAI	GTCTC	1 cut(s)	562
BsmBI	CGTCTC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	93, 300
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	304, 401
BspACI	CCGC	3 cut(s)	228, 284, 468
BspCNI	CTCAG	2 cut(s)	301, 577
BspFNI	CGCG	1 cut(s)	593
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	299, 409
BsrGI	TGTACA	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	352, 412
BssMI	GATC	2 cut(s)	304, 401
Bst4CI	ACNGT	2 cut(s)	434, 580
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	394
BstDEI	CTNAG	4 cut(s)	170, 258, 309, 564
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	210, 224
BstFNI	CGCG	1 cut(s)	593
BstH2I	RGCGCY	2 cut(s)	177, 556
BstHHI	GCGC	2 cut(s)	176, 555
BstKTI	GATC	2 cut(s)	307, 404
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	2 cut(s)	304, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 214, 236
BstSFI	CTRYAG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	223, 241
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	210, 224
BveI	ACCTGC	1 cut(s)	326
CfoI	GCGC	2 cut(s)	176, 555
Cfr13I	GGNCC	2 cut(s)	461, 488
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	395, 415
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviJI	RGCY	7 cut(s)	91, 101, 182, 267, 298, 329, 353
CviKI_1	RGCY	7 cut(s)	91, 101, 182, 267, 298, 329, 353
CviQI	GTAC	2 cut(s)	395, 415
DdeI	CTNAG	4 cut(s)	170, 258, 309, 564
DpnI	GATC	2 cut(s)	306, 403
DpnII	GATC	2 cut(s)	304, 401
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	2 cut(s)	91, 298
Eco24I	GRGCYC	2 cut(s)	93, 300
Eco47I	GGWCC	2 cut(s)	461, 488
Eco47III	AGCGCT	2 cut(s)	175, 554
Eco53kI	GAGCTC	2 cut(s)	91, 298
EcoICRI	GAGCTC	2 cut(s)	91, 298
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	93, 300
Esp3I	CGTCTC	1 cut(s)	562
FaiI	YATR	8 cut(s)	7, 24, 65, 74, 126, 282, 320, 356
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	237, 255, 285
FokI	GGATG	2 cut(s)	211, 217
FriOI	GRGCYC	2 cut(s)	93, 300
Fsp4HI	GCNGC	3 cut(s)	237, 255, 285
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	2 cut(s)	175, 554
GluI	GCNGC	3 cut(s)	237, 255, 285
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	2 cut(s)	177, 556
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	176, 555
Hin6I	GCGC	2 cut(s)	174, 553
HinP1I	GCGC	2 cut(s)	174, 553
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	41, 276
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	441, 567
Hpy188III	TCNNGA	3 cut(s)	161, 308, 539
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	452, 472
HpyCH4III	ACNGT	2 cut(s)	434, 580
HpyCH4V	TGCA	7 cut(s)	9, 56, 83, 107, 208, 335, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 214, 236
HpyF3I	CTNAG	4 cut(s)	170, 258, 309, 564
HspAI	GCGC	2 cut(s)	174, 553
Kzo9I	GATC	2 cut(s)	304, 401
LmnI	GCTCC	3 cut(s)	88, 326, 350
LpnPI	CCDG	8 cut(s)	111, 174, 321, 321, 333, 383, 425, 584
Lsp1109I	GCAGC	2 cut(s)	223, 241
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	384
MalI	GATC	2 cut(s)	306, 403
MboI	GATC	2 cut(s)	304, 401
MboII	GAAGA	2 cut(s)	467, 599
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	93, 300
MluCI	AATT	7 cut(s)	68, 108, 143, 218, 321, 390, 423
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	79, 241, 256, 444, 474
MseI	TTAA	3 cut(s)	149, 344, 378
MspI	CCGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	319
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	205, 214, 236
NdeII	GATC	2 cut(s)	304, 401
PaqCI	CACCTGC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	238, 256, 286
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	461
Psp124BI	GAGCTC	2 cut(s)	93, 300
Psp5II	RGGWCCY	1 cut(s)	461
PspPI	GGNCC	2 cut(s)	461, 488
PspPPI	RGGWCCY	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	2 cut(s)	396, 416
RsaNI	GTAC	2 cut(s)	395, 415
SacI	GAGCTC	2 cut(s)	93, 300
SaqAI	TTAA	3 cut(s)	149, 344, 378
SatI	GCNGC	3 cut(s)	237, 255, 285
Sau3AI	GATC	2 cut(s)	304, 401
Sau96I	GGNCC	2 cut(s)	461, 488
SchI	GAGTC	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	93, 300
SetI	ASST	8 cut(s)	93, 133, 184, 300, 331, 340, 355, 466
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	461, 488
Sse9I	AATT	7 cut(s)	68, 108, 143, 218, 321, 390, 423
SsiI	CCGC	3 cut(s)	228, 284, 468
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	2 cut(s)	93, 300
TaaI	ACNGT	2 cut(s)	434, 580
TaqI	TCGA	1 cut(s)	540
TasI	AATT	7 cut(s)	68, 108, 143, 218, 321, 390, 423
TatI	WGTACW	2 cut(s)	394, 414
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	149, 344, 378
Tru9I	TTAA	3 cut(s)	149, 344, 378
TseI	GCWGC	2 cut(s)	236, 254
TspDTI	ATGAA	3 cut(s)	61, 80, 141
Van91I	CCANNNNNTGG	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	461, 488
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.