Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

29295811 .. 29306200

Gene Structure 10390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48998

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGACTTATATAACAAAAAGTGTGCATGTCAATGAGACAACATGCCTCCTCTTGAATGCTTCTTTAACATATGAATACATGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGCTATAACCACTCCCCTTGATGTGATTAAAACTAGACTAATTGTACAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCCCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCAGTTCAATCTTTTTTGGTGTTCTCGAAAGAACAAAGCGCTTACTTGCTCAGAGACGACCAACAGTTGATGAAGACGCGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

7.76

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 121	4.7e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AccII	CGCG	1 cut(s)	389
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	2 cut(s)	95, 205
AfaI	GTAC	2 cut(s)	192, 212
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	55, 274, 318
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
AluBI	AGCT	3 cut(s)	94, 125, 149
AluI	AGCT	3 cut(s)	94, 125, 149
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	29, 358
AlwI	GGATC	2 cut(s)	95, 205
Aor51HI	AGCGCT	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	257, 284
AvaII	GGWCC	2 cut(s)	257, 284
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	29, 358
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	257, 284
BmgT120I	GGNCC	2 cut(s)	257, 284
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	148, 208
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	96, 374
BseNI	ACTGG	2 cut(s)	148, 208
BseRI	GAGGAG	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	29, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmI	GAATGC	2 cut(s)	61, 115
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	100, 197
BspACI	CCGC	1 cut(s)	264
BspCNI	CTCAG	2 cut(s)	97, 373
BspFNI	CGCG	1 cut(s)	389
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	95, 205
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	148, 208
BssMI	GATC	2 cut(s)	100, 197
Bst4CI	ACNGT	2 cut(s)	230, 376
BstAUI	TGTACA	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	105, 360
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	2 cut(s)	103, 200
BstMAI	GTCTC	2 cut(s)	29, 358
BstMBI	GATC	2 cut(s)	100, 197
BstNSI	RCATGY	2 cut(s)	29, 45
BstUI	CGCG	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	257, 284
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	191, 211
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	3 cut(s)	26, 42, 79
CviJI	RGCY	3 cut(s)	94, 125, 149
CviKI_1	RGCY	3 cut(s)	94, 125, 149
CviQI	GTAC	2 cut(s)	191, 211
DdeI	CTNAG	2 cut(s)	105, 360
DpnI	GATC	2 cut(s)	102, 199
DpnII	GATC	2 cut(s)	100, 197
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	257, 284
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	96
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	3 cut(s)	29, 45, 82
FaiI	YATR	9 cut(s)	9, 11, 27, 43, 70, 72, 80, 116, 152
FatI	CATG	3 cut(s)	25, 41, 78
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	352
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	29, 45, 82
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	237, 363
Hpy188III	TCNNGA	3 cut(s)	52, 104, 335
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	248, 268
HpyCH4III	ACNGT	2 cut(s)	230, 376
HpyCH4V	TGCA	3 cut(s)	25, 131, 137
HpyF3I	CTNAG	2 cut(s)	105, 360
Hsp92II	CATG	3 cut(s)	29, 45, 82
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	100, 197
LmnI	GCTCC	2 cut(s)	122, 146
LpnPI	CCDG	6 cut(s)	117, 117, 129, 179, 221, 380
MaeI	CTAG	1 cut(s)	180
MalI	GATC	2 cut(s)	102, 199
MboI	GATC	2 cut(s)	100, 197
MboII	GAAGA	2 cut(s)	263, 395
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	3 cut(s)	117, 186, 219
MnlI	CCTC	4 cut(s)	56, 59, 240, 270
MseI	TTAA	3 cut(s)	65, 140, 174
MslI	CAYNNNNRTG	1 cut(s)	30
Mva1269I	GAATGC	2 cut(s)	61, 115
MvnI	CGCG	1 cut(s)	389
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	100, 197
NlaIII	CATG	3 cut(s)	29, 45, 82
NspI	RCATGY	2 cut(s)	29, 45
PaqCI	CACCTGC	1 cut(s)	122
PctI	GAATGC	2 cut(s)	61, 115
PpuMI	RGGWCCY	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	257, 284
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	2 cut(s)	192, 212
RsaNI	GTAC	2 cut(s)	191, 211
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	65, 140, 174
Sau3AI	GATC	2 cut(s)	100, 197
Sau96I	GGNCC	2 cut(s)	257, 284
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	96, 127, 136, 151, 262
SinI	GGWCC	2 cut(s)	257, 284
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	117, 186, 219
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	230, 376
TaqI	TCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	117, 186, 219
TatI	WGTACW	2 cut(s)	190, 210
Tru1I	TTAA	3 cut(s)	65, 140, 174
Tru9I	TTAA	3 cut(s)	65, 140, 174
TspDTI	ATGAA	2 cut(s)	87, 396
VpaK11BI	GGWCC	2 cut(s)	257, 284
XagI	CCTNNNNNAGG	1 cut(s)	272
XceI	RCATGY	2 cut(s)	29, 45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.