Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

20332936 .. 20334518

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0213100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTTCTTCAATTCACTACGATATTCACTGCGTGCTTCTTCTTCACTTGGCCACGTCATCATTATCGTCATCATCGTCACCTTCGATGTCGTTCCGCGTCAAAGCTTTCTCCAATGACGAAGCGAGCGAAAGAGGCCGTGAAGCTTCTGGAGAAGCCGTCGATATGCACCGCCGACGAGCTCCACTACGTCTCCGTGCCCAACTCCGATTGAAGGCTCGCCCTCTTGTGATACCGCATTTGCCCCACGAGTCTCAGAGATCGAAGGCTTCTACTCTTCGTCTTCAATTTGGGGTTATGGAAGGGACATCTGAGACTCCCAATTCCACTCCCATGCATACTCCAACTAATGGTTCAAGCACTGGAACCACTCCAACACCCACACCCACACCTACTCAGATGGTGGATCAAGGTCATCAACAAGGAGCTGCAGCACTGCCTAGTTGGTATTTTGATGAGCCTCCTGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

157

Amino Acids

17.06

Weight (kDa)

9.03

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	97, 172, 236
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	214, 350
AgsI	TTSAA	4 cut(s)	12, 214, 287, 357
AjiI	CACGTC	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AluBI	AGCT	5 cut(s)	107, 146, 182, 428, 471
AluI	AGCT	5 cut(s)	107, 146, 182, 428, 471
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	3 cut(s)	197, 258, 308
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	51, 136
ApeKI	GCWGC	2 cut(s)	428, 431
AsuHPI	GGTGA	1 cut(s)	72
AsuNHI	GCTAGC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	184
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	415, 443
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	2 cut(s)	123, 143
BcoDI	GTCTC	3 cut(s)	197, 258, 308
BfaI	CTAG	3 cut(s)	441, 468, 472
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	429, 432
BlsI	GCNGC	2 cut(s)	430, 433
BmgBI	CACGTC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	367
BmtI	GCTAGC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 350
Bse1I	ACTGG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	214, 350
BseMII	CTCAG	3 cut(s)	269, 303, 410
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	415, 443
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	53, 138
BsiHKAI	GWGCWC	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	214, 350
BsmAI	GTCTC	3 cut(s)	197, 258, 308
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	53, 138
Bsp1286I	GDGCHC	2 cut(s)	184, 202
Bsp143I	GATC	2 cut(s)	260, 406
BspACI	CCGC	3 cut(s)	97, 172, 236
BspANI	GGCC	2 cut(s)	53, 138
BspCNI	CTCAG	3 cut(s)	268, 304, 409
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	433
BspOI	GCTAGC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	2 cut(s)	260, 406
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	4 cut(s)	35, 127, 220, 469
BstDEI	CTNAG	3 cut(s)	255, 312, 396
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	263, 409
BstMAI	GTCTC	3 cut(s)	197, 258, 308
BstMBI	GATC	2 cut(s)	260, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	415, 443
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	53, 138
BtrI	CACGTC	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	28, 434
BtsIMutI	CAGTG	3 cut(s)	28, 360, 434
Cac8I	GCNNGC	4 cut(s)	35, 127, 220, 469
CseI	GACGC	1 cut(s)	88
CviAII	CATG	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	255, 312, 396
DpnI	GATC	2 cut(s)	262, 408
DpnII	GATC	2 cut(s)	260, 406
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	167, 299, 335, 339
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	429, 432
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	429, 432
FspBI	CTAG	3 cut(s)	441, 468, 472
GluI	GCNGC	2 cut(s)	429, 432
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	53, 138
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	105, 144
HinfI	GANTC	2 cut(s)	251, 316
HphI	GGTGA	1 cut(s)	72
Hpy188I	TCNGA	4 cut(s)	209, 258, 313, 399
Hpy188III	TCNNGA	1 cut(s)	150
Hpy99I	CGWCG	2 cut(s)	164, 180
HpyAV	CCTTC	4 cut(s)	93, 208, 259, 296
HpyCH4IV	ACGT	2 cut(s)	56, 190
HpyCH4V	TGCA	3 cut(s)	169, 337, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	3 cut(s)	255, 312, 396
HpySE526I	ACGT	2 cut(s)	56, 190
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	260, 406
LmnI	GCTCC	2 cut(s)	187, 425
LpnPI	CCDG	2 cut(s)	135, 348
Lsp1109I	GCAGC	2 cut(s)	415, 443
MaeI	CTAG	3 cut(s)	441, 468, 472
MaeII	ACGT	2 cut(s)	56, 190
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	2 cut(s)	262, 408
MboI	GATC	2 cut(s)	260, 406
MboII	GAAGA	4 cut(s)	32, 35, 269, 275
MhlI	GDGCHC	2 cut(s)	184, 202
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	3 cut(s)	12, 287, 322
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	260, 310
MmeI	TCCRAC	2 cut(s)	368, 398
MnlI	CCTC	3 cut(s)	128, 234, 471
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	53
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	2 cut(s)	260, 406
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	3 cut(s)	74, 83, 126
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	430, 433
PleI	GAGTC	2 cut(s)	259, 310
PpsI	GAGTC	2 cut(s)	259, 310
Psp124BI	GAGCTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	429, 432
Sau3AI	GATC	2 cut(s)	260, 406
SchI	GAGTC	2 cut(s)	260, 310
SduI	GDGCHC	2 cut(s)	184, 202
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	12, 287, 322
SsiI	CCGC	3 cut(s)	97, 172, 236
SspMI	CTAG	3 cut(s)	441, 468, 472
SstI	GAGCTC	1 cut(s)	184
TaiI	ACGT	2 cut(s)	59, 193
TaqI	TCGA	3 cut(s)	86, 162, 263
TasI	AATT	3 cut(s)	12, 287, 322
TscAI	CASTG	3 cut(s)	35, 367, 441
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	428, 431
Tsp45I	GTSAC	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	3 cut(s)	35, 367, 441
Van91I	CCANNNNNTGG	1 cut(s)	350
XspI	CTAG	3 cut(s)	441, 468, 472
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.