Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

62242381 .. 62251050

Gene Structure 8670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAGGACGATAAGCCATTTGATTTCTTACGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGGGTGGTTGTTGAAACAGCTTTATATCCCATTGATACTATGAAGACAAGATTCCAGGCTGCTCATGGTGGAAGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTATTACCAGTTTCCTGCCACCTGAAGATTGTAGGGTTCGGCGAGAGGCCCCAGTTTCGAGCCTGGGTCCACGAAGCAGGTTTGCAGGTTTTCTGGGTTTCAAAGAAGGATAAAAGACTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

9.51

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	13 - 49	2.9e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	263, 271
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	2 cut(s)	34, 64
AgsI	TTSAA	3 cut(s)	83, 157, 297
AjnI	CCWGG	2 cut(s)	123, 257
AluBI	AGCT	2 cut(s)	68, 89
AluI	AGCT	2 cut(s)	68, 89
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	243, 262
AvaII	GGWCC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	125, 259
BfuAI	ACCTGC	2 cut(s)	263, 271
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	125, 259
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	243, 262
BmiI	GGNNCC	2 cut(s)	245, 263
BmrFI	CCNGG	2 cut(s)	125, 259
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	203, 247
BseBI	CCWGG	2 cut(s)	125, 259
BseDI	CCNNGG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	203, 247
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	245, 263
BspMI	ACCTGC	2 cut(s)	263, 271
BsrI	ACTGG	2 cut(s)	203, 247
BssECI	CCNNGG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	125, 259
BstBAI	YACGTR	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	125, 259
BstSCI	CCNGG	2 cut(s)	123, 257
BstSNI	TACGTA	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	244
BveI	ACCTGC	2 cut(s)	263, 271
Cfr13I	GGNCC	2 cut(s)	243, 262
Csp6I	GTAC	2 cut(s)	33, 63
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	7 cut(s)	16, 68, 89, 128, 179, 244, 257
CviKI_1	RGCY	7 cut(s)	16, 68, 89, 128, 179, 244, 257
CviQI	GTAC	2 cut(s)	33, 63
Eco105I	TACGTA	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	123, 257
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	53, 94, 110, 135, 338
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	154, 171
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	135, 151, 295
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	4, 280, 319
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	31
MboII	GAAGA	2 cut(s)	124, 232
MluCI	AATT	2 cut(s)	320, 355
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	37, 53, 234
MseI	TTAA	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	125, 259
MvaI	CCWGG	2 cut(s)	125, 259
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	245, 263
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	123, 257
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	123, 257
PspN4I	GGNNCC	2 cut(s)	245, 263
PspPI	GGNCC	2 cut(s)	243, 262
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	34, 64
RsaNI	GTAC	2 cut(s)	33, 63
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	243, 262
ScrFI	CCNGG	2 cut(s)	125, 259
SetI	ASST	8 cut(s)	34, 64, 70, 91, 219, 277, 285, 345
SinI	GGWCC	1 cut(s)	262
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	2 cut(s)	320, 355
StyD4I	CCNGG	2 cut(s)	123, 257
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	320, 355
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	125, 353
VpaK11BI	GGWCC	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.