Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

61707093 .. 61715387

Gene Structure 8295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTCCTCTTACTCTGGCAGTCAATTCGGAGAGCTTTGCCGGAGCTTCTTCATCAGATGCGTGTAGCAAGAAATTTCAGAATGTTCCTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCATTTGATTTCTTACGTACTTTATTTGGTATGTGTACTACTGCAATTGAAATTCCTGTGCCGCATGCTGCTCGTGGTGGAGGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTATTACCGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGGGCTTGTGGAGGCATTGCTGCTTCACTCATTCGTGTTCCAACGGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCTGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTTAAAGGACTCTATGCGGGATATGGATCATTTTTATTGCGAGATTTGCCATTTGATGCAATTCAATTTTGTCTATATGAGCAGCTCCGGATAGGTTATAAAGTGGTGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGCTATAACCACTCCCCTTGATGTCATTAAAACTAGACTAATGGTACAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCGGTTCAATCTTTTTTGGTGTTCTCGAGAGAACAAAGCGCTTACTTGCTCAGAGACGACCAACAGTTGGTGAAGACACGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

33.08

Weight (kDa)

9.55

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	117 - 198	6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	212 - 298	1.1e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AarI	CACCTGC	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	653
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccBSI	CCGCTC	1 cut(s)	797
AccIII	TCCGGA	1 cut(s)	591
AciI	CCGC	6 cut(s)	100, 200, 377, 521, 795, 843
AclWI	GGATC	3 cut(s)	538, 626, 736
AcsI	RAATTY	2 cut(s)	74, 189
AfaI	GTAC	4 cut(s)	157, 175, 723, 743
AfeI	AGCGCT	2 cut(s)	358, 881
AfiI	CCNNNNNNNGG	1 cut(s)	908
AgsI	TTSAA	5 cut(s)	188, 235, 569, 805, 849
AloI	GAACNNNNNNTCC	2 cut(s)	829, 861
AluBI	AGCT	7 cut(s)	36, 47, 365, 589, 625, 656, 680
AluI	AGCT	7 cut(s)	36, 47, 365, 589, 625, 656, 680
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	889
AlwI	GGATC	3 cut(s)	538, 626, 736
Ama87I	CYCGRG	1 cut(s)	866
Aor13HI	TCCGGA	1 cut(s)	591
Aor51HI	AGCGCT	2 cut(s)	358, 881
ApeKI	GCWGC	5 cut(s)	206, 398, 473, 491, 586
ApoI	RAATTY	2 cut(s)	74, 189
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	2 cut(s)	359, 882
AspS9I	GGNCC	3 cut(s)	5, 788, 815
AsuHPI	GGTGA	1 cut(s)	923
AvaI	CYCGRG	1 cut(s)	866
AvaII	GGWCC	3 cut(s)	5, 788, 815
BanII	GRGCYC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	5 cut(s)	193, 385, 460, 478, 598
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 191, 225
BcoDI	GTCTC	1 cut(s)	889
BfaI	CTAG	1 cut(s)	711
BfoI	RGCGCY	2 cut(s)	360, 883
BfuAI	ACCTGC	1 cut(s)	653
BisI	GCNGC	6 cut(s)	200, 207, 399, 474, 492, 587
BlsI	GCNGC	6 cut(s)	201, 208, 400, 475, 493, 588
Bme18I	GGWCC	3 cut(s)	5, 788, 815
BmeT110I	CYCGRG	1 cut(s)	866
BmgT120I	GGNCC	3 cut(s)	5, 788, 815
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	49, 122, 432, 550
BpiI	GAAGAC	1 cut(s)	921
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	529
BsaWI	WCCGGW	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	679, 739
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	529
BseAI	TCCGGA	1 cut(s)	591
BseGI	GGATG	1 cut(s)	447
BseJI	GATNNNNATC	1 cut(s)	529
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	627, 905
BseNI	ACTGG	2 cut(s)	679, 739
BseXI	GCAGC	5 cut(s)	193, 385, 460, 478, 598
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	3 cut(s)	42, 281, 592
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	1 cut(s)	889
BsmBI	CGTCTC	1 cut(s)	889
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	866
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	530, 631, 728
BspACI	CCGC	6 cut(s)	100, 200, 377, 521, 795, 843
BspCNI	CTCAG	2 cut(s)	628, 904
BspEI	TCCGGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	3 cut(s)	538, 626, 736
BsrBI	CCGCTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	679, 739
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	3 cut(s)	530, 631, 728
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	761, 907
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	125, 204
BstDEI	CTNAG	4 cut(s)	353, 495, 636, 891
BstF5I	GGATG	1 cut(s)	447
BstH2I	RGCGCY	2 cut(s)	360, 883
BstHHI	GCGC	2 cut(s)	359, 882
BstKTI	GATC	3 cut(s)	533, 634, 731
BstMAI	GTCTC	1 cut(s)	889
BstMBI	GATC	3 cut(s)	530, 631, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	442, 451, 473, 550
BstNSI	RCATGY	2 cut(s)	127, 206
BstSNI	TACGTA	1 cut(s)	155
BstV1I	GCAGC	5 cut(s)	193, 385, 460, 478, 598
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BtsCI	GGATG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	2 cut(s)	125, 204
CfoI	GCGC	2 cut(s)	359, 882
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	5, 788, 815
Csp6I	GTAC	4 cut(s)	156, 174, 722, 742
CspCI	CAANNNNNGTGG	2 cut(s)	676, 711
CviAII	CATG	2 cut(s)	124, 203
CviQI	GTAC	4 cut(s)	156, 174, 722, 742
DdeI	CTNAG	4 cut(s)	353, 495, 636, 891
DpnI	GATC	3 cut(s)	532, 633, 730
DpnII	GATC	3 cut(s)	530, 631, 728
DraI	TTTAAA	1 cut(s)	508
Ecl136II	GAGCTC	1 cut(s)	625
Eco105I	TACGTA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	3 cut(s)	5, 788, 815
Eco47III	AGCGCT	2 cut(s)	358, 881
Eco53kI	GAGCTC	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	2 cut(s)	5, 788
EcoT38I	GRGCYC	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	889
FaeI	CATG	2 cut(s)	127, 206
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	2 cut(s)	123, 202
FauI	CCCGC	3 cut(s)	370, 514, 802
Fnu4HI	GCNGC	6 cut(s)	200, 207, 399, 474, 492, 587
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	6 cut(s)	200, 207, 399, 474, 492, 587
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	2 cut(s)	358, 881
GluI	GCNGC	6 cut(s)	200, 207, 399, 474, 492, 587
GsuI	CTGGAG	1 cut(s)	696
HaeII	RGCGCY	2 cut(s)	360, 883
HapII	CCGG	3 cut(s)	42, 281, 592
HhaI	GCGC	2 cut(s)	359, 882
Hin1II	CATG	2 cut(s)	127, 206
Hin6I	GCGC	2 cut(s)	357, 880
HinP1I	GCGC	2 cut(s)	357, 880
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	3 cut(s)	42, 281, 592
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	2 cut(s)	174, 757
Hpy188I	TCNGA	5 cut(s)	31, 58, 81, 768, 894
Hpy188III	TCNNGA	7 cut(s)	232, 249, 344, 592, 635, 866, 868
Hpy8I	GTNNAC	2 cut(s)	174, 757
HpyAV	CCTTC	3 cut(s)	229, 779, 799
HpyCH4III	ACNGT	2 cut(s)	761, 907
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	8 cut(s)	113, 127, 182, 290, 445, 563, 662, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	442, 451, 473, 550
HpyF3I	CTNAG	4 cut(s)	353, 495, 636, 891
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	127, 206
HspAI	GCGC	2 cut(s)	357, 880
Kpn2I	TCCGGA	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	530, 631, 728
LmnI	GCTCC	4 cut(s)	44, 594, 653, 677
Lsp1109I	GCAGC	5 cut(s)	193, 385, 460, 478, 598
LweI	GCATC	4 cut(s)	49, 122, 432, 550
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	154
MalI	GATC	3 cut(s)	532, 633, 730
MbiI	CCGCTC	1 cut(s)	797
MboI	GATC	3 cut(s)	530, 631, 728
MboII	GAAGA	3 cut(s)	42, 794, 926
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	2 cut(s)	280, 443
MnlI	CCTC	8 cut(s)	18, 212, 383, 418, 478, 493, 771, 801
MroI	TCCGGA	1 cut(s)	591
MseI	TTAA	4 cut(s)	332, 507, 671, 705
MspI	CCGG	3 cut(s)	42, 281, 592
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	646
MwoI	GCNNNNNNNGC	4 cut(s)	442, 451, 473, 550
NdeII	GATC	3 cut(s)	530, 631, 728
NlaIII	CATG	2 cut(s)	127, 206
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	127, 206
PaeI	GCATGC	2 cut(s)	127, 206
PaeR7I	CTCGAG	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	653
PctI	GAATGC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	908
PkrI	GCNGC	6 cut(s)	201, 208, 400, 475, 493, 588
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	2 cut(s)	5, 788
PsiI	TTATAA	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	627
Psp5II	RGGWCCY	2 cut(s)	5, 788
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	5, 788, 815
PspPPI	RGGWCCY	2 cut(s)	5, 788
PsuI	RGATCY	1 cut(s)	728
RsaI	GTAC	4 cut(s)	157, 175, 723, 743
RsaNI	GTAC	4 cut(s)	156, 174, 722, 742
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	332, 507, 671, 705
SatI	GCNGC	6 cut(s)	200, 207, 399, 474, 492, 587
Sau3AI	GATC	3 cut(s)	530, 631, 728
Sau96I	GGNCC	3 cut(s)	5, 788, 815
SchI	GAGTC	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	4 cut(s)	49, 122, 432, 550
Sfr274I	CTCGAG	1 cut(s)	866
SinI	GGWCC	3 cut(s)	5, 788, 815
SlaI	CTCGAG	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SnaBI	TACGTA	1 cut(s)	155
SphI	GCATGC	2 cut(s)	127, 206
SsiI	CCGC	6 cut(s)	100, 200, 377, 521, 795, 843
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	761, 907
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	867
TatI	WGTACW	2 cut(s)	173, 741
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	4 cut(s)	332, 507, 671, 705
Tru9I	TTAA	4 cut(s)	332, 507, 671, 705
TseI	GCWGC	5 cut(s)	206, 398, 473, 491, 586
TspDTI	ATGAA	2 cut(s)	42, 324
TspGWI	ACGGA	1 cut(s)	437
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	3 cut(s)	5, 788, 815
XapI	RAATTY	2 cut(s)	74, 189
XceI	RCATGY	2 cut(s)	127, 206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	825
XhoI	CTCGAG	1 cut(s)	866
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.