Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

14881555 .. 14888935

Gene Structure 7381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTCCTCTTACTCTGGCACTCAATTCCGATAGCTTTCCCGGCGCTTCTCCTTCTTCTTCAGATGCTTGTGGCAAGAAATTTCTGAATTTGCCTATGGTAAAGCGGAAGGCTTTTGCATCGGTCAGCATGCAGGATGATAAGCCATTTGACTTCTTACGTACTTTATTTGAGGGTGTTATAGCAGGAGGCACTGCTGGTGTTGTTGTTGAAACTGCTTTATATCCCATTGATACTATAAAGACAAGGTTGCAGGCAGCTCGTGGTGGAGGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCCGGAAATATTGCTGGTGTATTACCGGCTTCTGCAATTTTTGTTGGAGTATATGAACCTACGAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGTGCTTTAGCTCATTTCACTGCGGGGGCATGTGGAGGCATTGCTGCTTCACTCATTCGTGTTCCAACAGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCCGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAGGGACTCTATGCGGGATATGGATCATTTTTATTGCGAGATTTGCCATTTGATGCAATTCAATTTTGTCTATATGAGCAGCTTCGGATAGGTTATAAAGTCGCGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTGTAATTGGAGCATTTGCAGGTGCATTAACTGGAGCTATAACCACGCCCCTTGATGTGATTAAAACTAGACTAATGGTACAGGTAAGCCCCATCTGCTGTTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

268

Amino Acids

28.1

Weight (kDa)

9.36

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	56 - 129	1.4e-11	Mitochondrial carrier protein
Mito_carr	PF00153	134 - 215	6.6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	229 - 315	1.5e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AarI	CACCTGC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	704
AccII	CGCG	1 cut(s)	662
AciI	CCGC	5 cut(s)	106, 428, 516, 572, 662
AclWI	GGATC	2 cut(s)	589, 677
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	80, 88
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	163, 774
AgsI	TTSAA	4 cut(s)	212, 286, 559, 620
AluBI	AGCT	6 cut(s)	36, 260, 416, 640, 676, 731
AluI	AGCT	6 cut(s)	36, 260, 416, 640, 676, 731
Alw21I	GWGCWC	1 cut(s)	678
AlwI	GGATC	2 cut(s)	589, 677
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	5 cut(s)	257, 449, 524, 542, 637
ApoI	RAATTY	2 cut(s)	80, 88
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	678
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	5 cut(s)	269, 436, 511, 529, 649
BccI	CCATC	1 cut(s)	794
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BcnI	CCSGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	762
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	704
BisI	GCNGC	6 cut(s)	258, 450, 525, 543, 638, 663
BlsI	GCNGC	6 cut(s)	259, 451, 526, 544, 639, 664
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	4 cut(s)	55, 128, 483, 601
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	730
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	580
BseGI	GGATG	3 cut(s)	142, 498, 512
BseJI	GATNNNNATC	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	730
BseXI	GCAGC	5 cut(s)	269, 436, 511, 529, 649
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	678
BsiSI	CCGG	3 cut(s)	42, 309, 332
BslFI	GGGAC	2 cut(s)	303, 576
BsmFI	GGGAC	2 cut(s)	303, 576
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	2 cut(s)	581, 682
BspACI	CCGC	5 cut(s)	106, 428, 516, 572, 662
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	704
BspPI	GGATC	2 cut(s)	589, 677
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	730
BssAI	RCCGGY	1 cut(s)	331
BssMI	GATC	2 cut(s)	581, 682
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	131, 255
BstDEI	CTNAG	3 cut(s)	404, 546, 687
BstF5I	GGATG	3 cut(s)	142, 498, 512
BstFNI	CGCG	1 cut(s)	662
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	584, 685
BstMBI	GATC	2 cut(s)	581, 682
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 493, 502, 524, 601, 789
BstNSI	RCATGY	2 cut(s)	133, 438
BstSCI	CCNGG	1 cut(s)	40
BstSNI	TACGTA	1 cut(s)	161
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	5 cut(s)	269, 436, 511, 529, 649
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	142, 498, 512
BtsI	GCAGTG	2 cut(s)	192, 423
BtsIMutI	CAGTG	2 cut(s)	192, 423
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	2 cut(s)	131, 255
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	162, 773
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	3 cut(s)	130, 435, 801
CviQI	GTAC	2 cut(s)	162, 773
DdeI	CTNAG	3 cut(s)	404, 546, 687
DpnI	GATC	2 cut(s)	583, 684
DpnII	GATC	2 cut(s)	581, 682
EaeI	YGGCCR	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	676
Eco105I	TACGTA	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	678
FaeI	CATG	3 cut(s)	133, 438, 804
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	2 cut(s)	303, 576
FatI	CATG	3 cut(s)	129, 434, 800
FauI	CCCGC	2 cut(s)	421, 565
Fnu4HI	GCNGC	6 cut(s)	258, 450, 525, 543, 638, 663
FokI	GGATG	3 cut(s)	149, 499, 505
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	6 cut(s)	258, 450, 525, 543, 638, 663
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	6 cut(s)	258, 450, 525, 543, 638, 663
GsuI	CTGGAG	1 cut(s)	747
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	3 cut(s)	42, 309, 332
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	133, 438, 804
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	564
HpaII	CCGG	3 cut(s)	42, 309, 332
Hpy188I	TCNGA	4 cut(s)	31, 64, 87, 645
Hpy188III	TCNNGA	4 cut(s)	283, 300, 395, 686
HpyAV	CCTTC	3 cut(s)	63, 103, 280
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	9 cut(s)	119, 133, 253, 341, 496, 614, 713, 719, 800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 493, 502, 524, 601, 789
HpyF3I	CTNAG	3 cut(s)	404, 546, 687
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	133, 438, 804
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	581, 682
LmnI	GCTCC	2 cut(s)	704, 728
Lsp1109I	GCAGC	5 cut(s)	269, 436, 511, 529, 649
LweI	GCATC	4 cut(s)	55, 128, 483, 601
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	1 cut(s)	160
MalI	GATC	2 cut(s)	583, 684
MboI	GATC	2 cut(s)	581, 682
MboII	GAAGA	2 cut(s)	48, 51
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	9 cut(s)	25, 80, 88, 342, 377, 506, 615, 620, 699
MlyI	GAGTC	1 cut(s)	558
MmeI	TCCRAC	2 cut(s)	331, 494
MnlI	CCTC	8 cut(s)	18, 166, 182, 263, 434, 469, 529, 544
MseI	TTAA	3 cut(s)	383, 722, 756
MspI	CCGG	3 cut(s)	42, 309, 332
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	697
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	6 cut(s)	42, 493, 502, 524, 601, 789
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	581, 682
NlaIII	CATG	3 cut(s)	133, 438, 804
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	133, 438
PaeI	GCATGC	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	704
PctI	GAATGC	1 cut(s)	697
PkrI	GCNGC	6 cut(s)	259, 451, 526, 544, 639, 664
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
Ppu21I	YACGTR	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
RsaI	GTAC	2 cut(s)	163, 774
RsaNI	GTAC	2 cut(s)	162, 773
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	383, 722, 756
SatI	GCNGC	6 cut(s)	258, 450, 525, 543, 638, 663
Sau3AI	GATC	2 cut(s)	581, 682
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	4 cut(s)	55, 128, 483, 601
SinI	GGWCC	1 cut(s)	5
SnaBI	TACGTA	1 cut(s)	161
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	9 cut(s)	25, 80, 88, 342, 377, 506, 615, 620, 699
SsiI	CCGC	5 cut(s)	106, 428, 516, 572, 662
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	762
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	40
TaiI	ACGT	1 cut(s)	163
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	9 cut(s)	25, 80, 88, 342, 377, 506, 615, 620, 699
TauI	GCSGC	1 cut(s)	665
Tru1I	TTAA	3 cut(s)	383, 722, 756
Tru9I	TTAA	3 cut(s)	383, 722, 756
TscAI	CASTG	2 cut(s)	199, 430
TseI	GCWGC	5 cut(s)	257, 449, 524, 542, 637
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	199, 430
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	2 cut(s)	80, 88
XceI	RCATGY	2 cut(s)	133, 438
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.