Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

52785263 .. 52786134

Gene Structure 872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGTCCTCTTACTCTGGCCGTCAATTTGGAAAGCTTTACTTGTCCGTTGACTCCAAAGACTAAAATGCCCGGCTTTCTGAGTTTCATGTGTTCCAAGTTTCTGAGTTTCATGCATTGTGGAAGAATTGGATTTTTATTTGATGCATGTGGCAAGAAATTTCAGAATGTTACTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCGTGCAGGATGATAAACGTTTTGATTTCTTGCGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGCTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

9.42

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	82 - 112	2.8e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AciI	CCGC	1 cut(s)	184
AclI	AACGTT	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	2 cut(s)	241, 271
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	3 cut(s)	36, 275, 296
AluI	AGCT	3 cut(s)	36, 275, 296
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	5
BcnI	CCSGG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	133, 206
BpuMI	CCSGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	71, 95
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	72
BsnI	GGCC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	72, 96
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	209, 333
BstDEI	CTNAG	2 cut(s)	80, 104
BstF5I	GGATG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	209, 333
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	240, 270
CviAII	CATG	3 cut(s)	88, 112, 147
CviJI	RGCY	5 cut(s)	20, 36, 75, 275, 296
CviKI_1	RGCY	5 cut(s)	20, 36, 75, 275, 296
CviQI	GTAC	2 cut(s)	240, 270
DdeI	CTNAG	2 cut(s)	80, 104
EaeI	YGGCCR	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT22I	ATGCAT	2 cut(s)	117, 148
FaeI	CATG	3 cut(s)	91, 115, 150
FaiI	YATR	7 cut(s)	89, 113, 148, 176, 260, 301, 317
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FatI	CATG	3 cut(s)	87, 111, 146
FokI	GGATG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	3 cut(s)	91, 115, 150
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	81, 105, 165
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	115, 146, 197, 211, 331
HpyF3I	CTNAG	2 cut(s)	80, 104
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	91, 115, 150
LpnPI	CCDG	7 cut(s)	2, 85, 197, 249, 261, 317, 321
LweI	GCATC	2 cut(s)	133, 206
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	135
MluCI	AATT	3 cut(s)	25, 126, 158
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	18, 244, 260
Mph1103I	ATGCAT	2 cut(s)	117, 148
MseI	TTAA	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	72
NciI	CCSGG	1 cut(s)	72
NlaIII	CATG	3 cut(s)	91, 115, 150
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	2 cut(s)	117, 148
NspI	RCATGY	1 cut(s)	150
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	5
Psp1406I	AACGTT	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	241, 271
RsaNI	GTAC	2 cut(s)	240, 270
SaqAI	TTAA	1 cut(s)	340
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	6 cut(s)	38, 226, 271, 277, 298, 340
SfaNI	GCATC	2 cut(s)	133, 206
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	3 cut(s)	25, 126, 158
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	70
TaiI	ACGT	1 cut(s)	226
TasI	AATT	3 cut(s)	25, 126, 158
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	76, 100
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	150
Zsp2I	ATGCAT	2 cut(s)	117, 148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.