Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

31908010 .. 31913092

Gene Structure 5083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGGGCTTGTGGAGGCATTGCGGCTTCGCTCATTCGTGTTCCAACGGAGTCCGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGCAAAGAGAGAACTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGCTATAACCACTCCCCTTGATGTAATTAAAACCAGACTAATGGTACAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGATCAGATTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCGGTTCAATCTTTTTTGGTGTTCTCGAGAGAACAAAGCGCTTACTTGCTCAGAGACGACCAACAGTTGGTGAAGACACGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

156

Amino Acids

16.46

Weight (kDa)

9.03

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	58 - 144	2.1e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	335
AciI	CCGC	6 cut(s)	41, 62, 93, 149, 333, 381
AclWI	GGATC	2 cut(s)	164, 274
AfaI	GTAC	2 cut(s)	261, 281
AfeI	AGCGCT	2 cut(s)	22, 419
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	136, 343, 387
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	3 cut(s)	29, 194, 218
AluI	AGCT	3 cut(s)	29, 194, 218
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	2 cut(s)	164, 274
Ama87I	CYCGRG	1 cut(s)	404
Aor51HI	AGCGCT	2 cut(s)	22, 419
ApeKI	GCWGC	2 cut(s)	101, 119
AspLEI	GCGC	2 cut(s)	23, 420
AspS9I	GGNCC	2 cut(s)	326, 353
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	326, 353
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	88, 106
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	427
BfoI	RGCGCY	2 cut(s)	24, 421
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	4 cut(s)	63, 102, 120, 150
BlsI	GCNGC	4 cut(s)	64, 103, 121, 151
Bme18I	GGWCC	2 cut(s)	326, 353
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	326, 353
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	217, 277
Bse3DI	GCAATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	165, 443
BseNI	ACTGG	2 cut(s)	217, 277
BseXI	GCAGC	2 cut(s)	88, 106
BsiHKCI	CYCGRG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	427
BsmBI	CGTCTC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	169, 266, 301
BspACI	CCGC	6 cut(s)	41, 62, 93, 149, 333, 381
BspCNI	CTCAG	2 cut(s)	166, 442
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	164, 274
BsrBI	CCGCTC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	217, 277
BssMI	GATC	3 cut(s)	169, 266, 301
Bst4CI	ACNGT	2 cut(s)	299, 445
BstDEI	CTNAG	4 cut(s)	17, 123, 174, 429
BstH2I	RGCGCY	2 cut(s)	24, 421
BstHHI	GCGC	2 cut(s)	23, 420
BstKTI	GATC	3 cut(s)	172, 269, 304
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	169, 266, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	88, 106
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	191
CfoI	GCGC	2 cut(s)	23, 420
Cfr13I	GGNCC	2 cut(s)	326, 353
Csp6I	GTAC	2 cut(s)	260, 280
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviJI	RGCY	6 cut(s)	29, 47, 65, 132, 194, 218
CviKI_1	RGCY	6 cut(s)	29, 47, 65, 132, 194, 218
CviQI	GTAC	2 cut(s)	260, 280
DdeI	CTNAG	4 cut(s)	17, 123, 174, 429
DpnI	GATC	3 cut(s)	171, 268, 303
DpnII	GATC	3 cut(s)	169, 266, 301
EciI	GGCGGA	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	326, 353
Eco47III	AGCGCT	2 cut(s)	22, 419
Eco88I	CYCGRG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	326
Esp3I	CGTCTC	1 cut(s)	427
FaiI	YATR	3 cut(s)	147, 185, 221
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FauI	CCCGC	2 cut(s)	34, 340
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	63, 102, 120, 150
Fsp4HI	GCNGC	4 cut(s)	63, 102, 120, 150
GlaI	GCGC	2 cut(s)	22, 419
GluI	GCNGC	4 cut(s)	63, 102, 120, 150
GsuI	CTGGAG	1 cut(s)	234
HaeII	RGCGCY	2 cut(s)	24, 421
HhaI	GCGC	2 cut(s)	23, 420
Hin6I	GCGC	2 cut(s)	21, 418
HinP1I	GCGC	2 cut(s)	21, 418
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	89, 141
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	306, 432
Hpy188III	TCNNGA	4 cut(s)	8, 173, 404, 406
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	317, 337
HpyCH4III	ACNGT	2 cut(s)	299, 445
HpyCH4V	TGCA	2 cut(s)	200, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	4 cut(s)	17, 123, 174, 429
HspAI	GCGC	2 cut(s)	21, 418
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	169, 266, 301
LmnI	GCTCC	2 cut(s)	191, 215
LpnPI	CCDG	8 cut(s)	21, 186, 186, 198, 248, 262, 290, 449
Lsp1109I	GCAGC	2 cut(s)	88, 106
MalI	GATC	3 cut(s)	171, 268, 303
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	3 cut(s)	169, 266, 301
MboII	GAAGA	2 cut(s)	332, 464
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	3 cut(s)	186, 240, 288
MlyI	GAGTC	2 cut(s)	98, 135
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	5 cut(s)	47, 106, 121, 309, 339
MseI	TTAA	2 cut(s)	209, 243
Mva1269I	GAATGC	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	3 cut(s)	169, 266, 301
PaeR7I	CTCGAG	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	64, 103, 121, 151
PleI	GAGTC	2 cut(s)	97, 135
PpsI	GAGTC	2 cut(s)	97, 135
PpuMI	RGGWCCY	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	326
PspPI	GGNCC	2 cut(s)	326, 353
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	261, 281
RsaNI	GTAC	2 cut(s)	260, 280
SaqAI	TTAA	2 cut(s)	209, 243
SatI	GCNGC	4 cut(s)	63, 102, 120, 150
Sau3AI	GATC	3 cut(s)	169, 266, 301
Sau96I	GGNCC	2 cut(s)	326, 353
SchI	GAGTC	2 cut(s)	98, 135
SetI	ASST	5 cut(s)	31, 196, 205, 220, 331
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	2 cut(s)	326, 353
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	186, 240, 288
SsiI	CCGC	6 cut(s)	41, 62, 93, 149, 333, 381
TaaI	ACNGT	2 cut(s)	299, 445
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	186, 240, 288
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	65, 152
Tru1I	TTAA	2 cut(s)	209, 243
Tru9I	TTAA	2 cut(s)	209, 243
TseI	GCWGC	2 cut(s)	101, 119
TspGWI	ACGGA	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	326, 353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XhoI	CTCGAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.