Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

29391445 .. 29397144

Gene Structure 5700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTTGGTCATCACACCATTGAAACCCAAAACCATTTTGATGCATGCTTCCTGGGATCGGTTTTCTTACTGCGGGGGCTTGCGGAGGCATTGCTGCTTCGCTCATTCGTGTTCCAACGGAGTTGTAAAGCAAAGGATGCAAAGGGGCCATTCACATCCACCTCTGCTGCTGTTCGCCTGATTGCTGCCAAGGAGAGCTTCAAAGGACGCTATGCGGCAAAGAGAGAGCTCAATGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCAGTAACTGGACTTATAACCACTCCCTTTGATGTGATTAAAACTAGACTAATGGTACAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGATCTCCCGCTCTTTTGAAGGATGGTTTGGTGTTGCAGTGGTTGGCTCTTTTTGCAGTGGCGGTCCAAAGGGCTGTACGTCTGGGAAGATACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

157

Amino Acids

17.2

Weight (kDa)

9.62

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	80 - 143	3.4e-13	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	386
AciI	CCGC	5 cut(s)	73, 83, 215, 384, 437
AclWI	GGATC	3 cut(s)	64, 230, 385
AfaI	GTAC	3 cut(s)	327, 332, 453
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	23, 202, 394
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	4 cut(s)	182, 214, 386, 418
AluBI	AGCT	3 cut(s)	198, 229, 260
AluI	AGCT	3 cut(s)	198, 229, 260
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	64, 230, 385
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	94, 167, 185
AspS9I	GGNCC	2 cut(s)	146, 439
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	81, 154, 172
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	4 cut(s)	95, 168, 186, 216
BlsI	GCNGC	4 cut(s)	96, 169, 187, 217
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	146, 439
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	31, 127
BsaJI	CCNNGG	2 cut(s)	52, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	52, 189
BseGI	GGATG	3 cut(s)	142, 155, 403
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	81, 154, 172
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	56, 235, 377
BspACI	CCGC	5 cut(s)	73, 83, 215, 384, 437
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	64, 230, 385
BsrBI	CCGCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	52, 189
BssMI	GATC	3 cut(s)	56, 235, 377
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	330, 350
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	46, 81
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	142, 155, 403
BstKTI	GATC	3 cut(s)	59, 238, 380
BstMBI	GATC	3 cut(s)	56, 235, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 428
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	81, 154, 172
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	142, 155, 403
BtsI	GCAGTG	2 cut(s)	419, 438
BtsIMutI	CAGTG	2 cut(s)	419, 438
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	46, 81
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	146, 439
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	326, 331, 452
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	7 cut(s)	79, 148, 198, 229, 260, 422, 449
CviKI_1	RGCY	7 cut(s)	79, 148, 198, 229, 260, 422, 449
CviQI	GTAC	3 cut(s)	326, 331, 452
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	58, 237, 379
DpnII	GATC	3 cut(s)	56, 235, 377
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	48
FaiI	YATR	4 cut(s)	46, 213, 251, 287
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	1 cut(s)	44
FauI	CCCGC	2 cut(s)	66, 391
Fnu4HI	GCNGC	4 cut(s)	95, 168, 186, 216
FokI	GGATG	3 cut(s)	142, 149, 410
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	95, 168, 186, 216
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	4 cut(s)	95, 168, 186, 216
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	368, 388
HpyCH4III	ACNGT	2 cut(s)	330, 350
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	44, 140, 266, 272, 412, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 428
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	56, 235, 377
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	7 cut(s)	38, 65, 191, 252, 252, 264, 443
Lsp1109I	GCAGC	3 cut(s)	81, 154, 172
LweI	GCATC	2 cut(s)	31, 127
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	58, 237, 379
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	3 cut(s)	56, 235, 377
MboII	GAAGA	2 cut(s)	383, 474
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	252, 339
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	79, 172, 360
Mph1103I	ATGCAT	1 cut(s)	46
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	137, 428
NdeII	GATC	3 cut(s)	56, 235, 377
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	257
PctI	GAATGC	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	96, 169, 187, 217
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	146, 439
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	377
RsaI	GTAC	3 cut(s)	327, 332, 453
RsaNI	GTAC	3 cut(s)	326, 331, 452
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	95, 168, 186, 216
Sau3AI	GATC	3 cut(s)	56, 235, 377
Sau96I	GGNCC	2 cut(s)	146, 439
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	164, 200, 231, 262, 271, 457, 471
SfaNI	GCATC	2 cut(s)	31, 127
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	39
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	252, 339
SsiI	CCGC	5 cut(s)	73, 83, 215, 384, 437
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	330, 350
TaiI	ACGT	1 cut(s)	457
TasI	AATT	2 cut(s)	252, 339
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	419, 438
TseI	GCWGC	3 cut(s)	94, 167, 185
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	419, 438
VpaK11BI	GGWCC	1 cut(s)	439
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.