Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000238.1

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

57658 .. 58753

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000238.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atggttcttctggtgcatgcagatgcatgtggcaagaaatttcagaatgttactatggcaaagcggaagtcttttgcatctgtcagcatgccggatgataagccatttgatttcttacgtactttttttgagggtgttatagcaggaggtacagctggggtggttgttgaaacagctttatatcccattgatactataaagacaagattgcaggcaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

73

Amino Acids

7.91

Weight (kDa)

8.93

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AciI	CCGC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	2 cut(s)	121, 151
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	155, 176
AluI	AGCT	2 cut(s)	155, 176
ApoI	RAATTY	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
BfuAI	ACCTGC	1 cut(s)	206
BmsI	GCATC	2 cut(s)	13, 86
BsaAI	YACGTR	1 cut(s)	119
BseGI	GGATG	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	92
BspACI	CCGC	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	18, 89, 213
BstF5I	GGATG	1 cut(s)	100
BstNSI	RCATGY	3 cut(s)	20, 30, 91
BstSNI	TACGTA	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	18, 89, 213
Csp6I	GTAC	2 cut(s)	120, 150
CviAII	CATG	3 cut(s)	17, 27, 88
CviJI	RGCY	3 cut(s)	103, 155, 176
CviKI_1	RGCY	3 cut(s)	103, 155, 176
CviQI	GTAC	2 cut(s)	120, 150
Eco105I	TACGTA	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	28
FaeI	CATG	3 cut(s)	20, 30, 91
FaiI	YATR	7 cut(s)	18, 28, 56, 89, 140, 181, 197
FatI	CATG	3 cut(s)	16, 26, 87
FokI	GGATG	1 cut(s)	107
GsaI	CCCAGC	1 cut(s)	159
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	3 cut(s)	20, 30, 91
HpaII	CCGG	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	16, 20, 26, 77, 211
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	20, 30, 91
LpnPI	CCDG	5 cut(s)	105, 129, 141, 197, 201
LweI	GCATC	2 cut(s)	13, 86
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	49
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	2 cut(s)	124, 140
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	1 cut(s)	220
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	92
NlaIII	CATG	3 cut(s)	20, 30, 91
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	3 cut(s)	20, 30, 91
PaeI	GCATGC	2 cut(s)	20, 91
Ppu21I	YACGTR	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	121, 151
RsaNI	GTAC	2 cut(s)	120, 150
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	220
SetI	ASST	5 cut(s)	121, 151, 157, 178, 220
SfaNI	GCATC	2 cut(s)	13, 86
SgeI	CNNG	9 cut(s)	23, 29, 39, 46, 100, 104, 156, 168, 216
SmiMI	CAYNNNNRTG	1 cut(s)	21
SnaBI	TACGTA	1 cut(s)	119
SphI	GCATGC	2 cut(s)	20, 91
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	64
TaiI	ACGT	1 cut(s)	121
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
XapI	RAATTY	1 cut(s)	38
XceI	RCATGY	3 cut(s)	20, 30, 91
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.