Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

34738931 .. 34740201

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG295200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGTCCTCTTACTCTGGCAGTCAATTCGGAGAGCTTTGCCGGAGCTTCTTCATCAGATGCATGTAGCAAGAAATTTCAGAATGTTCCTATGGCAAAGCGGAAGCCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCATTTGATTTCTTACGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCTGCTCGTGGTGGAGGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTATTACCGTATGTGCCTTCTGAGTACTTGATTCAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

119

Amino Acids

12.55

Weight (kDa)

9.1

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	54 - 91	2.8e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	3 cut(s)	157, 187, 344
AgsI	TTSAA	3 cut(s)	206, 280, 353
AluBI	AGCT	4 cut(s)	36, 47, 191, 212
AluI	AGCT	4 cut(s)	36, 47, 191, 212
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	5
BauI	CACGAG	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 236, 270
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	49, 122
BsaAI	YACGTR	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	125, 249
BstDEI	CTNAG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	66, 127
BstSNI	TACGTA	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	125, 249
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	3 cut(s)	156, 186, 343
CviAII	CATG	2 cut(s)	63, 124
CviJI	RGCY	8 cut(s)	36, 47, 106, 139, 191, 212, 251, 302
CviKI_1	RGCY	8 cut(s)	36, 47, 106, 139, 191, 212, 251, 302
CviQI	GTAC	3 cut(s)	156, 186, 343
DdeI	CTNAG	1 cut(s)	339
Eco105I	TACGTA	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	64
FaeI	CATG	2 cut(s)	66, 127
FaiI	YATR	7 cut(s)	64, 92, 125, 176, 217, 233, 330
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	62, 123
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	2 cut(s)	66, 127
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	31, 58, 81, 340
Hpy188III	TCNNGA	2 cut(s)	277, 294
HpyAV	CCTTC	2 cut(s)	274, 345
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	62, 113, 127, 247
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	66, 127
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	2, 55, 113, 165, 177, 233, 279, 288, 300
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	49, 122
MaeII	ACGT	1 cut(s)	154
MboII	GAAGA	1 cut(s)	42
MluCI	AATT	2 cut(s)	25, 74
MnlI	CCTC	4 cut(s)	18, 160, 176, 257
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	42
NlaIII	CATG	2 cut(s)	66, 127
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	66, 127
PaeI	GCATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	157, 187, 344
RsaNI	GTAC	3 cut(s)	156, 186, 343
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	5
ScaI	AGTACT	1 cut(s)	344
SetI	ASST	6 cut(s)	38, 49, 157, 187, 193, 214
SfaNI	GCATC	2 cut(s)	49, 122
SinI	GGWCC	1 cut(s)	5
SnaBI	TACGTA	1 cut(s)	155
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	25, 74
SsiI	CCGC	1 cut(s)	100
SspI	AATATT	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	157
TasI	AATT	2 cut(s)	25, 74
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	2 cut(s)	66, 127
ZrmI	AGTACT	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.