Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

4117785 .. 4124994

Gene Structure 7210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1037000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTCCTCTGACGCTAGTAGTGAACTCGAAAACGGGCTCAGGAACTTCACCAGATGAATATAGCCAGAAAACGCAGTATGCTCCTATAGGAACACGGAAGTCTTTTGCATCAGTCAGCATGCAGGAAGAGAAACCCTTTGATTTCTTACGCACTTTATTTGAGGGTGTCATTGCAGGAGGTACAGCCGGGGTTGTTGTTGAAACGGCTCTATACCCCATTGATACTATAAAGACAAGACTGCAGGCTGCTCGTGGTGGAGGGAGAATAGCCTTTAAGGGGCTTTATTCTGGATTGACTGGAAATCTTGCTGGTGTCTTACCGGCTTCTGCAATTTTTGTTGGAGTGTATGAACCTGCGAAGAAAAAACTGTTGAAGATTTTCCCTGAAAATCTAAGTGCTCTAGCCCATTTTACAGCAGGGGCTTTTGGAGGTATTGCTGCATCACTCGTTCGTGTTCCGACAGAGGTTGTTAAGCAAAGGATGCAAACTGGGCAATTTACATCAGCCTCTGTTGCTGTCCGCCATATTGCTTTTAAAGAGGGCTTTAAAGGATTCTATGCGGGATATGGATCGTTTTTATTGAGAGATTTGCCATTTGATGCAATTCAATTTTGCCTATACGAGCAGCTTCGGCTAGGTTACAAAAAAGCAGCAAAAAGAGAGCTCAACGATCCTGAAAATGCTATCATTGGGGCTTTTGCTGGCGCAGTAACTGGAGCAATAACCACTCCCCTTGATGTGATTAAAACCAGGCTAATGGTTCAGGGATCTGCAAACCAGTACAAAGGAATCATTGATTGTGTTCAAACTGTTGTGAGGGAAGAAGGACGTTCTGCTCTTTTGAAGGGCATCGGGCCGAGAGTACTGTGGATAGGCATAGGCGGATCAATCTTTTTTGGAGTCCTTGAGAGGACAAAGCAGCTGCTTGCTCAGAGGAAACCTGCACTTCCTCAAGACTCAAAGCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

34.76

Weight (kDa)

9.73

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	53 - 126	7.7e-12	Mitochondrial carrier protein
Mito_carr	PF00153	131 - 214	7.6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	226 - 312	4.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	364, 952
AciI	CCGC	3 cut(s)	523, 563, 885
AclWI	GGATC	4 cut(s)	580, 668, 778, 895
AfaI	GTAC	3 cut(s)	184, 785, 867
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	5 cut(s)	203, 376, 611, 809, 847
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	3 cut(s)	631, 667, 925
AluI	AGCT	3 cut(s)	631, 667, 925
Alw21I	GWGCWC	2 cut(s)	403, 669
AlwI	GGATC	4 cut(s)	580, 668, 778, 895
AlwNI	CAGNNNCTG	2 cut(s)	512, 716
AoxI	GGCC	1 cut(s)	857
ApeKI	GCWGC	6 cut(s)	248, 440, 628, 653, 922, 925
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	5, 857
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	41, 669
BauI	CACGAG	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	403, 669
BbvI	GCAGC	6 cut(s)	235, 427, 640, 665, 912, 934
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	190
BfaI	CTAG	3 cut(s)	17, 404, 638
BfmI	CTRYAG	2 cut(s)	87, 242
BfuAI	ACCTGC	2 cut(s)	364, 952
BisI	GCNGC	6 cut(s)	249, 441, 629, 654, 923, 926
BlsI	GCNGC	6 cut(s)	250, 442, 630, 655, 924, 927
BmcAI	AGTACT	1 cut(s)	867
Bme1390I	CCNGG	2 cut(s)	190, 754
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 857
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	190, 754
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	5 cut(s)	119, 452, 474, 592, 861
BmuI	ACTGGG	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	929, 939
BpuMI	CCSGG	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	571
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	4 cut(s)	304, 496, 721, 781
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	489
BseJI	GATNNNNATC	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	54, 947
BseNI	ACTGG	4 cut(s)	304, 496, 721, 781
BseXI	GCAGC	6 cut(s)	235, 427, 640, 665, 912, 934
BsgI	GTGCAG	1 cut(s)	930
BshFI	GGCC	1 cut(s)	859
BsiHKAI	GWGCWC	2 cut(s)	403, 669
BsiSI	CCGG	2 cut(s)	189, 323
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	1 cut(s)	859
Bsp1286I	GDGCHC	3 cut(s)	41, 403, 669
Bsp143I	GATC	4 cut(s)	572, 673, 770, 887
BspACI	CCGC	3 cut(s)	523, 563, 885
BspANI	GGCC	1 cut(s)	859
BspCNI	CTCAG	2 cut(s)	53, 946
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	246
BspMI	ACCTGC	2 cut(s)	364, 952
BspPI	GGATC	4 cut(s)	580, 668, 778, 895
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	4 cut(s)	304, 496, 721, 781
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	4 cut(s)	572, 673, 770, 887
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	3 cut(s)	372, 814, 870
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	4 cut(s)	122, 246, 706, 930
BstDEI	CTNAG	3 cut(s)	40, 395, 933
BstF5I	GGATG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	710
BstKTI	GATC	4 cut(s)	575, 676, 773, 890
BstMBI	GATC	4 cut(s)	572, 673, 770, 887
BstMWI	GCNNNNNNNGC	4 cut(s)	484, 493, 515, 634
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	188, 752
BstSFI	CTRYAG	2 cut(s)	87, 242
BstV1I	GCAGC	6 cut(s)	235, 427, 640, 665, 912, 934
BstX2I	RGATCY	1 cut(s)	770
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	859
BtsCI	GGATG	1 cut(s)	489
BveI	ACCTGC	2 cut(s)	364, 952
Cac8I	GCNNGC	4 cut(s)	122, 246, 706, 930
CaiI	CAGNNNCTG	2 cut(s)	512, 716
CfoI	GCGC	1 cut(s)	710
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	5, 857
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	183, 784, 866
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	3 cut(s)	183, 784, 866
DdeI	CTNAG	3 cut(s)	40, 395, 933
DpnI	GATC	4 cut(s)	574, 675, 772, 889
DpnII	GATC	4 cut(s)	572, 673, 770, 887
DraI	TTTAAA	2 cut(s)	538, 550
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	2 cut(s)	512, 900
Ecl136II	GAGCTC	1 cut(s)	667
Eco24I	GRGCYC	2 cut(s)	41, 669
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	752
EcoT38I	GRGCYC	2 cut(s)	41, 669
FaeI	CATG	1 cut(s)	124
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	6 cut(s)	249, 441, 629, 654, 923, 926
FokI	GGATG	1 cut(s)	496
FriOI	GRGCYC	2 cut(s)	41, 669
Fsp4HI	GCNGC	6 cut(s)	249, 441, 629, 654, 923, 926
FspBI	CTAG	3 cut(s)	17, 404, 638
GlaI	GCGC	1 cut(s)	709
GluI	GCNGC	6 cut(s)	249, 441, 629, 654, 923, 926
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	1 cut(s)	859
HapII	CCGG	2 cut(s)	189, 323
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	710
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HinfI	GANTC	4 cut(s)	555, 792, 903, 959
HpaII	CCGG	2 cut(s)	189, 323
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	12, 462, 936
Hpy188III	TCNNGA	4 cut(s)	42, 291, 677, 956
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	821, 841
HpyCH4III	ACNGT	3 cut(s)	372, 814, 870
HpyCH4IV	ACGT	1 cut(s)	832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	484, 493, 515, 634
HpyF3I	CTNAG	3 cut(s)	40, 395, 933
HpySE526I	ACGT	1 cut(s)	832
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	572, 673, 770, 887
LmnI	GCTCC	2 cut(s)	88, 719
Lsp1109I	GCAGC	6 cut(s)	235, 427, 640, 665, 912, 934
LweI	GCATC	5 cut(s)	119, 452, 474, 592, 861
MaeI	CTAG	3 cut(s)	17, 404, 638
MaeII	ACGT	1 cut(s)	832
MaeIII	GTNAC	2 cut(s)	641, 712
MalI	GATC	4 cut(s)	574, 675, 772, 889
MboI	GATC	4 cut(s)	572, 673, 770, 887
MboII	GAAGA	4 cut(s)	140, 373, 388, 836
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	3 cut(s)	41, 403, 669
MluCI	AATT	4 cut(s)	333, 497, 606, 611
MlyI	GAGTC	2 cut(s)	912, 953
MmeI	TCCRAC	2 cut(s)	322, 485
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	6 cut(s)	276, 474, 537, 549, 747, 973
MspA1I	CMGCKG	1 cut(s)	925
MspI	CCGG	2 cut(s)	189, 323
MspR9I	CCNGG	2 cut(s)	190, 754
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	484, 493, 515, 634
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	572, 673, 770, 887
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	885
NspI	RCATGY	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	555, 792
PkrI	GCNGC	6 cut(s)	250, 442, 630, 655, 924, 927
PleI	GAGTC	2 cut(s)	911, 953
PpsI	GAGTC	2 cut(s)	911, 953
PpuMI	RGGWCCY	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	5, 857
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	246
PstNI	CAGNNNCTG	2 cut(s)	512, 716
PsuI	RGATCY	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	925
RsaI	GTAC	3 cut(s)	184, 785, 867
RsaNI	GTAC	3 cut(s)	183, 784, 866
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	6 cut(s)	276, 474, 537, 549, 747, 973
SatI	GCNGC	6 cut(s)	249, 441, 629, 654, 923, 926
Sau3AI	GATC	4 cut(s)	572, 673, 770, 887
Sau96I	GGNCC	2 cut(s)	5, 857
ScaI	AGTACT	1 cut(s)	867
SchI	GAGTC	2 cut(s)	912, 953
ScrFI	CCNGG	2 cut(s)	190, 754
SduI	GDGCHC	3 cut(s)	41, 403, 669
SfaNI	GCATC	5 cut(s)	119, 452, 474, 592, 861
SfcI	CTRYAG	2 cut(s)	87, 242
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	908, 954
SmoI	CTYRAG	2 cut(s)	908, 954
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	4 cut(s)	333, 497, 606, 611
SsiI	CCGC	3 cut(s)	523, 563, 885
SspMI	CTAG	3 cut(s)	17, 404, 638
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	188, 752
TaaI	ACNGT	3 cut(s)	372, 814, 870
TaiI	ACGT	1 cut(s)	835
TaqI	TCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	333, 497, 606, 611
TatI	WGTACW	2 cut(s)	783, 865
TfiI	GAWTC	2 cut(s)	555, 792
Tru1I	TTAA	6 cut(s)	276, 474, 537, 549, 747, 973
Tru9I	TTAA	6 cut(s)	276, 474, 537, 549, 747, 973
TseI	GCWGC	6 cut(s)	248, 440, 628, 653, 922, 925
TspDTI	ATGAA	2 cut(s)	72, 366
TspGWI	ACGGA	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	3 cut(s)	17, 404, 638
ZrmI	AGTACT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.