Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

31401607 .. 31408692

Gene Structure 7086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGTCCTCTTACTCTGGCAGTCAATTCGGAGAGCTTTGCCGGAGCTTCTTCATCAGATGCATGTAGCAAGAAATTTCAGAATGTTCCTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCATTTGATTTCTTACGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCGTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCTGCTCATGGTGGAGGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTATTACCGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGGGCTTGTGGAGGCATTGCGGCTTCACTCATTCGTGTTCCAACGGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCCGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGGATACGGATCATTTTTATTGCGAGATTTGCCATTTGATGCGATTCAATTCTGTCTATATGAGCAGCTTCGGATAGGTTATAAAGTGGCCGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGCTATAACCACTCCTCTTGATGTGATTAAAACCAGACTAATGGTACAGGGATCTGCCAATCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGAGAAGAAGGACCGCCAGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCGGTTCAATCTTTTTTGGTGTTCTCGAGAGAACAAAGCGCCTACTTGCTCAGAGGCGACGAACAGTTGGTGAAGACACGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

34.59

Weight (kDa)

9.57

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	54 - 127	1.9e-11	Mitochondrial carrier protein
Mito_carr	PF00153	132 - 213	6.6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	227 - 313	1.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AciI	CCGC	8 cut(s)	100, 422, 443, 510, 566, 657, 836, 888
AclWI	GGATC	3 cut(s)	583, 671, 781
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	4 cut(s)	157, 187, 768, 788
AfeI	AGCGCT	1 cut(s)	403
AgsI	TTSAA	6 cut(s)	206, 280, 553, 614, 850, 894
AloI	GAACNNNNNNTCC	2 cut(s)	874, 906
AluBI	AGCT	9 cut(s)	36, 47, 191, 410, 634, 670, 701, 725, 842
AluI	AGCT	9 cut(s)	36, 47, 191, 410, 634, 670, 701, 725, 842
Alw21I	GWGCWC	1 cut(s)	672
AlwI	GGATC	3 cut(s)	583, 671, 781
Ama87I	CYCGRG	1 cut(s)	911
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	4 cut(s)	251, 518, 536, 631
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	2 cut(s)	404, 927
AspS9I	GGNCC	3 cut(s)	5, 833, 860
AsuHPI	GGTGA	1 cut(s)	968
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	3 cut(s)	5, 833, 860
BanII	GRGCYC	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	4 cut(s)	238, 505, 523, 643
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciVI	GTATCC	1 cut(s)	563
BfoI	RGCGCY	2 cut(s)	405, 928
BfuAI	ACCTGC	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	6 cut(s)	252, 444, 519, 537, 632, 657
BlsI	GCNGC	6 cut(s)	253, 445, 520, 538, 633, 658
Bme18I	GGWCC	3 cut(s)	5, 833, 860
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	3 cut(s)	5, 833, 860
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	49, 122, 477, 595
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	574
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	574
BseGI	GGATG	2 cut(s)	492, 506
BseJI	GATNNNNATC	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	672, 950
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	238, 505, 523, 643
BshFI	GGCC	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	2 cut(s)	42, 326
BslFI	GGGAC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	3 cut(s)	575, 676, 773
BspACI	CCGC	8 cut(s)	100, 422, 443, 510, 566, 657, 836, 888
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	2 cut(s)	673, 949
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	3 cut(s)	583, 671, 781
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	325
BssMI	GATC	3 cut(s)	575, 676, 773
Bst4CI	ACNGT	2 cut(s)	806, 952
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	125, 249, 840
BstDEI	CTNAG	4 cut(s)	398, 540, 681, 936
BstF5I	GGATG	2 cut(s)	492, 506
BstH2I	RGCGCY	2 cut(s)	405, 928
BstHHI	GCGC	2 cut(s)	404, 927
BstKTI	GATC	3 cut(s)	578, 679, 776
BstMBI	GATC	3 cut(s)	575, 676, 773
BstMWI	GCNNNNNNNGC	4 cut(s)	487, 496, 518, 595
BstNSI	RCATGY	2 cut(s)	66, 127
BstSNI	TACGTA	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	238, 505, 523, 643
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	1 cut(s)	773
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	656
BtsCI	GGATG	2 cut(s)	492, 506
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	3 cut(s)	125, 249, 840
CfoI	GCGC	2 cut(s)	404, 927
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	5, 833, 860
Csp6I	GTAC	4 cut(s)	156, 186, 767, 787
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	3 cut(s)	63, 124, 257
CviQI	GTAC	4 cut(s)	156, 186, 767, 787
DdeI	CTNAG	4 cut(s)	398, 540, 681, 936
DpnI	GATC	3 cut(s)	577, 678, 775
DpnII	GATC	3 cut(s)	575, 676, 773
EaeI	YGGCCR	1 cut(s)	654
EciI	GGCGGA	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	670
Eco105I	TACGTA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	672
Eco47I	GGWCC	3 cut(s)	5, 833, 860
Eco47III	AGCGCT	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	670
Eco88I	CYCGRG	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	672
FaeI	CATG	3 cut(s)	66, 127, 260
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	62, 123, 256
FauI	CCCGC	2 cut(s)	415, 559
Fnu4HI	GCNGC	6 cut(s)	252, 444, 519, 537, 632, 657
FokI	GGATG	2 cut(s)	493, 499
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	6 cut(s)	252, 444, 519, 537, 632, 657
GlaI	GCGC	2 cut(s)	403, 926
GluI	GCNGC	6 cut(s)	252, 444, 519, 537, 632, 657
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	2 cut(s)	405, 928
HaeIII	GGCC	1 cut(s)	656
HapII	CCGG	2 cut(s)	42, 326
HhaI	GCGC	2 cut(s)	404, 927
Hin1II	CATG	3 cut(s)	66, 127, 260
Hin6I	GCGC	2 cut(s)	402, 925
HinP1I	GCGC	2 cut(s)	402, 925
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	2 cut(s)	558, 610
HpaII	CCGG	2 cut(s)	42, 326
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	6 cut(s)	31, 58, 81, 639, 813, 939
Hpy188III	TCNNGA	7 cut(s)	277, 294, 389, 680, 740, 911, 913
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	3 cut(s)	274, 824, 844
HpyCH4III	ACNGT	2 cut(s)	806, 952
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	8 cut(s)	62, 113, 127, 247, 335, 490, 707, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	487, 496, 518, 595
HpyF3I	CTNAG	4 cut(s)	398, 540, 681, 936
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	66, 127, 260
HspAI	GCGC	2 cut(s)	402, 925
Kzo9I	GATC	3 cut(s)	575, 676, 773
LmnI	GCTCC	3 cut(s)	44, 698, 722
Lsp1109I	GCAGC	4 cut(s)	238, 505, 523, 643
LweI	GCATC	4 cut(s)	49, 122, 477, 595
MaeII	ACGT	1 cut(s)	154
MalI	GATC	3 cut(s)	577, 678, 775
MboI	GATC	3 cut(s)	575, 676, 773
MboII	GAAGA	3 cut(s)	42, 839, 971
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	8 cut(s)	25, 74, 336, 371, 500, 614, 693, 795
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	2 cut(s)	325, 488
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	3 cut(s)	377, 716, 750
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	42, 326
Mva1269I	GAATGC	1 cut(s)	691
MwoI	GCNNNNNNNGC	4 cut(s)	487, 496, 518, 595
NdeII	GATC	3 cut(s)	575, 676, 773
NlaIII	CATG	3 cut(s)	66, 127, 260
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	66, 127
PaeI	GCATGC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	911
PaqCI	CACCTGC	1 cut(s)	698
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	6 cut(s)	253, 445, 520, 538, 633, 658
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	672
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	5, 833, 860
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	4 cut(s)	157, 187, 768, 788
RsaNI	GTAC	4 cut(s)	156, 186, 767, 787
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	3 cut(s)	377, 716, 750
SatI	GCNGC	6 cut(s)	252, 444, 519, 537, 632, 657
Sau3AI	GATC	3 cut(s)	575, 676, 773
Sau96I	GGNCC	3 cut(s)	5, 833, 860
SchI	GAGTC	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	4 cut(s)	49, 122, 477, 595
Sfr274I	CTCGAG	1 cut(s)	911
SinI	GGWCC	3 cut(s)	5, 833, 860
SlaI	CTCGAG	1 cut(s)	911
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SnaBI	TACGTA	1 cut(s)	155
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	8 cut(s)	25, 74, 336, 371, 500, 614, 693, 795
SsiI	CCGC	8 cut(s)	100, 422, 443, 510, 566, 657, 836, 888
SstI	GAGCTC	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	806, 952
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	912
TasI	AATT	8 cut(s)	25, 74, 336, 371, 500, 614, 693, 795
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	2 cut(s)	446, 659
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	3 cut(s)	377, 716, 750
Tru9I	TTAA	3 cut(s)	377, 716, 750
TseI	GCWGC	4 cut(s)	251, 518, 536, 631
TspDTI	ATGAA	2 cut(s)	42, 369
TspGWI	ACGGA	2 cut(s)	482, 588
VpaK11BI	GGWCC	3 cut(s)	5, 833, 860
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	2 cut(s)	66, 127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XhoI	CTCGAG	1 cut(s)	911
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.