Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

56671118 .. 56688821

Gene Structure 17704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG362400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCCGGCTTTCTGAGTTTCATGTGTTCCAAGTTTCTGAGTTTCATGCATTGTGGAAGAATTGGATTTTTATTTGATGCATGTGGCAAGAAATTTCAGAATGTTACTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCGTGCAGGATGATAAACGTTTTGATTTCTTGCGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGCTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCAGGTTGTAAAGCAAAGGATGCAAACAGGGCAATTCACATCCGCCTCTGCTGCTGTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGCAAAGAGAGAGTTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGTTATAACCACTCCCCTTGATGTGATTAAAACTAGACTAATGGTACAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGTACGCATTGAGCCTTTATATCCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

191

Amino Acids

20.99

Weight (kDa)

9.35

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	60 - 122	4.6e-12	Mitochondrial carrier protein
Mito_carr	PF00153	131 - 181	2.7e-12	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	2 cut(s)	260, 407
AccBSI	CCGCTC	1 cut(s)	536
AciI	CCGC	4 cut(s)	118, 310, 365, 534
AclI	AACGTT	1 cut(s)	157
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	5 cut(s)	175, 205, 477, 482, 549
AgsI	TTSAA	4 cut(s)	224, 352, 382, 544
AluBI	AGCT	3 cut(s)	209, 230, 410
AluI	AGCT	3 cut(s)	209, 230, 410
AlwI	GGATC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	318, 335
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	527
BbvI	GCAGC	2 cut(s)	305, 322
BcnI	CCSGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	465
BfuAI	ACCTGC	2 cut(s)	260, 407
BisI	GCNGC	3 cut(s)	319, 336, 366
BlsI	GCNGC	3 cut(s)	320, 337, 367
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	3 cut(s)	67, 140, 277
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	433
BseGI	GGATG	3 cut(s)	154, 292, 306
BseMII	CTCAG	3 cut(s)	5, 29, 381
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	305, 322
BsgI	GTGCAG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	4 cut(s)	118, 310, 365, 534
BspCNI	CTCAG	3 cut(s)	6, 30, 382
BspMI	ACCTGC	2 cut(s)	260, 407
BspPI	GGATC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	480, 500
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	143, 267
BstDEI	CTNAG	4 cut(s)	14, 38, 339, 390
BstF5I	GGATG	3 cut(s)	154, 292, 306
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 296, 318, 324
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	2 cut(s)	305, 322
BtsCI	GGATG	3 cut(s)	154, 292, 306
BveI	ACCTGC	2 cut(s)	260, 407
Cac8I	GCNNGC	2 cut(s)	143, 267
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	5 cut(s)	174, 204, 476, 481, 548
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	22, 46, 81
CviJI	RGCY	6 cut(s)	9, 209, 230, 348, 410, 559
CviKI_1	RGCY	6 cut(s)	9, 209, 230, 348, 410, 559
CviQI	GTAC	5 cut(s)	174, 204, 476, 481, 548
DdeI	CTNAG	4 cut(s)	14, 38, 339, 390
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	527
EcoT22I	ATGCAT	2 cut(s)	51, 82
FaeI	CATG	3 cut(s)	25, 49, 84
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	3 cut(s)	21, 45, 80
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	319, 336, 366
FokI	GGATG	3 cut(s)	161, 293, 299
Fsp4HI	GCNGC	3 cut(s)	319, 336, 366
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	3 cut(s)	319, 336, 366
GsuI	CTGGAG	1 cut(s)	450
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	3 cut(s)	25, 49, 84
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	4 cut(s)	15, 39, 99, 507
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	2 cut(s)	518, 538
HpyCH4III	ACNGT	2 cut(s)	480, 500
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	8 cut(s)	49, 80, 131, 145, 265, 290, 416, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 296, 318, 324
HpyF3I	CTNAG	4 cut(s)	14, 38, 339, 390
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	25, 49, 84
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	2 cut(s)	305, 322
LweI	GCATC	3 cut(s)	67, 140, 277
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	387
MbiI	CCGCTC	1 cut(s)	536
MboI	GATC	1 cut(s)	385
MboII	GAAGA	2 cut(s)	69, 533
MluCI	AATT	5 cut(s)	60, 92, 300, 402, 489
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	6 cut(s)	178, 194, 323, 337, 510, 540
Mph1103I	ATGCAT	2 cut(s)	51, 82
MseI	TTAA	2 cut(s)	425, 459
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	287, 296, 318, 324
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	25, 49, 84
NsiI	ATGCAT	2 cut(s)	51, 82
NspI	RCATGY	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	407
PctI	GAATGC	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	320, 337, 367
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PpuMI	RGGWCCY	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	437
Psp1406I	AACGTT	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	527
PspPI	GGNCC	1 cut(s)	527
PspPPI	RGGWCCY	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	5 cut(s)	175, 205, 477, 482, 549
RsaNI	GTAC	5 cut(s)	174, 204, 476, 481, 548
SaqAI	TTAA	2 cut(s)	425, 459
SatI	GCNGC	3 cut(s)	319, 336, 366
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	9 cut(s)	160, 205, 211, 232, 274, 412, 421, 532, 549
SfaNI	GCATC	3 cut(s)	67, 140, 277
SinI	GGWCC	1 cut(s)	527
Sse9I	AATT	5 cut(s)	60, 92, 300, 402, 489
SsiI	CCGC	4 cut(s)	118, 310, 365, 534
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	480, 500
TaiI	ACGT	1 cut(s)	160
TasI	AATT	5 cut(s)	60, 92, 300, 402, 489
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	425, 459
Tru9I	TTAA	2 cut(s)	425, 459
TseI	GCWGC	2 cut(s)	318, 335
TspDTI	ATGAA	2 cut(s)	10, 34
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	1 cut(s)	465
Zsp2I	ATGCAT	2 cut(s)	51, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.