Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

17312823 .. 17319145

Gene Structure 6323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G168500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTCCTCTGACGCTAGCAGTGGATTCAAAAAGCTGTTCAGGAACTTCATCAGATGAATATTGCAAGAAAACGCAGTATGCTCCTATAGGAACACGGAAGTCTTTTGCATCAGTCAGTTTGCATGAAGATAAGCCATTTGATTTCTTACGCACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCTCTATACCCCATTGATACTATAAAGACAAGACTGCAGGCTGCTCGTGGGGGAGGGAAAATAGTCTTGAAGGGCCTTTATTCTGGGTTAGCTGGAAATCTTGCTGGTGTCTTACCGGCTTCTGCAATTTTTGTTGGAGTCTATGAACCTACGAAGCAGAAATTGTTGAAGATGTTTCCTGAAAATCTAAGTGCTTTAGCTCATTTTACAGCAGGGGCTTTTGGAGGCGTTGCTGCTTCACTCGTTCGTGTTCCGACAGAGGTTGTTAAGCAAAGGATGCAAACTGGGCAGTTTACATCGGCCTCTGATGCTGTCCGCCTTATTGCTTCTAAAGAGGGTTTCAAAGGATTCTATGCGGGATACGGATCGTTCTTATTGAGAGATTTGCCATTTGATGCAATTCAATTTTGCCTATACGAGCAGCTTCGGCTAGGTTACAAAGCGGCGGCAAAAAGAGAGCTCAATGATCCTGAGAATGCTATAATTGGAGCTTTTGCTGGGGCACTAACTGGAGCTGCAACCACTCCTCTTGATGTGATTAAAACCAGGCTAATGGTTCAGGGATCTGCAAACCAGTACAAAGGAATCATTGATTGTGTTCAAACTATTGTCAGGGAAGAAGGACCTCCTGCTCTTTTGAAGGGCATTGGGCCAAGAGTTCTGTGGATAGGCATAGGTGGATCGATTTTTTTTGGTGTCCTTGAGCGTACAAAGCGGTTTCTTTCTCAGAGGCGACCAACACTTCCTGAAGACTCAAAGCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

34.67

Weight (kDa)

9.39

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	523, 563, 650, 653, 922
AclWI	GGATC	4 cut(s)	580, 668, 778, 895
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	3 cut(s)	184, 785, 916
AgsI	TTSAA	8 cut(s)	30, 203, 277, 376, 550, 611, 809, 847
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	9 cut(s)	36, 188, 209, 299, 407, 631, 667, 698, 722
AluI	AGCT	9 cut(s)	36, 188, 209, 299, 407, 631, 667, 698, 722
Alw21I	GWGCWC	1 cut(s)	669
AlwI	GGATC	4 cut(s)	580, 668, 778, 895
AoxI	GGCC	3 cut(s)	280, 507, 857
ApeKI	GCWGC	4 cut(s)	248, 440, 628, 722
AspS9I	GGNCC	4 cut(s)	5, 280, 830, 857
AsuNHI	GCTAGC	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	5, 830
BaeGI	GKGCMC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	235, 427, 640, 709
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	1 cut(s)	560
BfaI	CTAG	2 cut(s)	17, 638
BfmI	CTRYAG	2 cut(s)	87, 242
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	6 cut(s)	249, 441, 629, 651, 654, 723
BlsI	GCNGC	6 cut(s)	250, 442, 630, 652, 655, 724
Bme1390I	CCNGG	1 cut(s)	754
Bme18I	GGWCC	2 cut(s)	5, 830
BmgT120I	GGNCC	4 cut(s)	5, 280, 830, 857
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	754
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	4 cut(s)	119, 474, 505, 592
BmtI	GCTAGC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	963
BpmI	CTGGAG	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	929
Bsa29I	ATCGAT	1 cut(s)	890
BsaBI	GATNNNNATC	1 cut(s)	571
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	3 cut(s)	496, 721, 781
Bse8I	GATNNNNATC	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	754
BseCI	ATCGAT	1 cut(s)	890
BseGI	GGATG	1 cut(s)	489
BseJI	GATNNNNATC	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	669, 947
BseNI	ACTGG	3 cut(s)	496, 721, 781
BseRI	GAGGAG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	4 cut(s)	235, 427, 640, 709
BseYI	CCCAGC	1 cut(s)	704
BshFI	GGCC	3 cut(s)	282, 509, 859
BshVI	ATCGAT	1 cut(s)	890
BsiHKAI	GWGCWC	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	282, 509, 859
Bsp1286I	GDGCHC	2 cut(s)	669, 712
Bsp143I	GATC	4 cut(s)	572, 673, 770, 887
BspACI	CCGC	5 cut(s)	523, 563, 650, 653, 922
BspANI	GGCC	3 cut(s)	282, 509, 859
BspCNI	CTCAG	2 cut(s)	670, 946
BspDI	ATCGAT	1 cut(s)	890
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	4 cut(s)	580, 668, 778, 895
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	3 cut(s)	496, 721, 781
BssAI	RCCGGY	1 cut(s)	322
BssMI	GATC	4 cut(s)	572, 673, 770, 887
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	754
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	18, 246
BstDEI	CTNAG	3 cut(s)	395, 678, 933
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	4 cut(s)	575, 676, 773, 890
BstMBI	GATC	4 cut(s)	572, 673, 770, 887
BstMWI	GCNNNNNNNGC	5 cut(s)	484, 493, 515, 634, 919
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	752
BstSFI	CTRYAG	2 cut(s)	87, 242
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	4 cut(s)	235, 427, 640, 709
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	770
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	770
Bsu15I	ATCGAT	1 cut(s)	890
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	3 cut(s)	282, 509, 859
BsuTUI	ATCGAT	1 cut(s)	890
BtsCI	GGATG	1 cut(s)	489
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	18, 246
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	4 cut(s)	5, 280, 830, 857
ClaI	ATCGAT	1 cut(s)	890
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	183, 784, 915
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviAII	CATG	1 cut(s)	125
CviQI	GTAC	3 cut(s)	183, 784, 915
DdeI	CTNAG	3 cut(s)	395, 678, 933
DpnI	GATC	4 cut(s)	574, 675, 772, 889
DpnII	GATC	4 cut(s)	572, 673, 770, 887
EciI	GGCGGA	1 cut(s)	512
Ecl136II	GAGCTC	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	5, 830
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	975
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	3 cut(s)	5, 280, 830
EcoRII	CCWGG	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	1 cut(s)	128
FatI	CATG	1 cut(s)	124
FauI	CCCGC	1 cut(s)	556
Fnu4HI	GCNGC	6 cut(s)	249, 441, 629, 651, 654, 723
FokI	GGATG	1 cut(s)	496
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	6 cut(s)	249, 441, 629, 651, 654, 723
FspBI	CTAG	2 cut(s)	17, 638
GluI	GCNGC	6 cut(s)	249, 441, 629, 651, 654, 723
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	3 cut(s)	282, 509, 859
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	5 cut(s)	26, 345, 555, 792, 959
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	5 cut(s)	12, 55, 462, 514, 936
Hpy188III	TCNNGA	6 cut(s)	42, 274, 386, 677, 737, 953
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	271, 821, 841
HpyCH4V	TGCA	9 cut(s)	66, 110, 124, 244, 332, 487, 605, 725, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	484, 493, 515, 634, 919
HpyF3I	CTNAG	3 cut(s)	395, 678, 933
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	572, 673, 770, 887
LmnI	GCTCC	3 cut(s)	88, 695, 719
Lsp1109I	GCAGC	4 cut(s)	235, 427, 640, 709
LweI	GCATC	4 cut(s)	119, 474, 505, 592
MaeI	CTAG	2 cut(s)	17, 638
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	4 cut(s)	574, 675, 772, 889
MboI	GATC	4 cut(s)	572, 673, 770, 887
MboII	GAAGA	4 cut(s)	140, 388, 836, 968
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	2 cut(s)	669, 712
MluCI	AATT	5 cut(s)	333, 368, 606, 611, 690
MlyI	GAGTC	2 cut(s)	354, 953
MmeI	TCCRAC	2 cut(s)	322, 485
MseI	TTAA	3 cut(s)	474, 747, 973
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	5 cut(s)	484, 493, 515, 634, 919
NdeII	GATC	4 cut(s)	572, 673, 770, 887
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	26, 555, 792
PkrI	GCNGC	6 cut(s)	250, 442, 630, 652, 655, 724
PleI	GAGTC	2 cut(s)	353, 953
PpsI	GAGTC	2 cut(s)	353, 953
PpuMI	RGGWCCY	2 cut(s)	5, 830
Psp124BI	GAGCTC	1 cut(s)	669
Psp5II	RGGWCCY	2 cut(s)	5, 830
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	4 cut(s)	5, 280, 830, 857
PspPPI	RGGWCCY	2 cut(s)	5, 830
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	184, 785, 916
RsaNI	GTAC	3 cut(s)	183, 784, 915
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	474, 747, 973
SatI	GCNGC	6 cut(s)	249, 441, 629, 651, 654, 723
Sau3AI	GATC	4 cut(s)	572, 673, 770, 887
Sau96I	GGNCC	4 cut(s)	5, 280, 830, 857
SchI	GAGTC	2 cut(s)	354, 953
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	2 cut(s)	669, 712
SfaNI	GCATC	4 cut(s)	119, 474, 505, 592
SfcI	CTRYAG	2 cut(s)	87, 242
SinI	GGWCC	2 cut(s)	5, 830
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
Sse9I	AATT	5 cut(s)	333, 368, 606, 611, 690
SsiI	CCGC	5 cut(s)	523, 563, 650, 653, 922
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	2 cut(s)	17, 638
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	752
TaqI	TCGA	1 cut(s)	890
TasI	AATT	5 cut(s)	333, 368, 606, 611, 690
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	2 cut(s)	653, 656
TfiI	GAWTC	3 cut(s)	26, 555, 792
Tru1I	TTAA	3 cut(s)	474, 747, 973
Tru9I	TTAA	3 cut(s)	474, 747, 973
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	4 cut(s)	248, 440, 628, 722
TspDTI	ATGAA	4 cut(s)	39, 72, 141, 366
TspGWI	ACGGA	2 cut(s)	112, 585
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	5, 830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XspI	CTAG	2 cut(s)	17, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.