Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011969.1

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

18858 .. 27729

Gene Structure 8872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011969.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgacgtccatcaaagccaatccggatagagtccagcgtcaagctgctcgtggtggagggaaaatagtcttgaagggactttattctggattggctggaaatcttgctggcgtattaccatcgatcgagaagaggaacgacccgaagcagaagaaacccgaagcaggaagaggaatgagcgacccgagcagaagaacgaccgaccgacagaactgggtctgggtctcctccgagcagaagaggaacgtcggtctgaagactgggcgtctgggtctcctccgagtagaagaggaacgtcgatctgaagtacgaactgggtctggcgtttgggtcttctccgagcagaagaggaacgtcagtctgaagtccgaactgggtctggcgtctgggtgtctgggtctcctccgagcagaagaggaacgtcgagtttcctgccacctgaagattgtagggttcggcaagagaccccagtttcgagcctgggtccgcgaagcaggtttgcagactgcgggggcttgtggaggcattcctgcttcactcattcgtgttccaatggaggttgtaaagcaaaggacgcaaacggggcaattcacatccgcctctgctgctgttcgccttattgctgctaaggagggcttcaaaggactctatgtgcgagatttgccgtttgatgcaattcaattttgtctatatgagcagcttcggataggttataaagtggcggcaaagagagagctcaacgatcctgagaatgctataattggagcttttgcagactattgtgagggaagaaggacctcccgcccttttgaagggtattggaccaagagtgctgtggatagggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

282

Amino Acids

31.25

Weight (kDa)

10.1

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	485
AccII	CGCG	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	5 cut(s)	487, 509, 597, 722, 802
AclWI	GGATC	1 cut(s)	737
AcuI	CTGAAG	4 cut(s)	275, 324, 383, 461
AcyI	GRCGYC	3 cut(s)	5, 265, 383
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	164, 812
AgsI	TTSAA	4 cut(s)	73, 640, 680, 812
AhdI	GACNNNNNGTC	1 cut(s)	264
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	4 cut(s)	44, 700, 736, 767
AluI	AGCT	4 cut(s)	44, 700, 736, 767
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	4 cut(s)	229, 278, 404, 457
AlwI	GGATC	1 cut(s)	737
Ama87I	CYCGRG	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	44, 605, 623, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
AspS9I	GGNCC	3 cut(s)	484, 795, 822
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	3 cut(s)	484, 795, 822
BanII	GRGCYC	1 cut(s)	738
BauI	CACGAG	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	263, 325
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	4 cut(s)	31, 592, 610, 709
BccI	CCATC	2 cut(s)	17, 127
BceAI	ACGGC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciT130I	CCWGG	1 cut(s)	481
BcoDI	GTCTC	4 cut(s)	229, 278, 404, 457
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	5 cut(s)	45, 606, 624, 698, 723
BlsI	GCNGC	5 cut(s)	46, 607, 625, 699, 724
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	3 cut(s)	484, 795, 822
BmeRI	GACNNNNNGTC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	484, 795, 822
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	481
BmrI	ACTGGG	5 cut(s)	223, 270, 324, 383, 463
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	5 cut(s)	223, 270, 324, 383, 463
BpiI	GAAGAC	2 cut(s)	263, 325
Bpu10I	CCTNAGC	1 cut(s)	627
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	3 cut(s)	5, 265, 383
BsaI	GGTCTC	4 cut(s)	229, 278, 404, 457
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 812
Bse1I	ACTGG	5 cut(s)	218, 265, 319, 378, 469
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	481
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	593
BseLI	CCNNNNNNNGG	2 cut(s)	164, 812
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	5 cut(s)	218, 265, 319, 378, 469
BseRI	GAGGAG	3 cut(s)	217, 266, 392
BseXI	GCAGC	4 cut(s)	31, 592, 610, 709
Bsh1236I	CGCG	1 cut(s)	489
Bsh1285I	CGRYCG	3 cut(s)	126, 201, 205
BshVI	ATCGAT	1 cut(s)	122
BsiEI	CGRYCG	3 cut(s)	126, 201, 205
BsiHKAI	GWGCWC	1 cut(s)	738
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	164, 812
BsmAI	GTCTC	4 cut(s)	229, 278, 404, 457
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	2 cut(s)	525, 757
Bso31I	GGTCTC	4 cut(s)	229, 278, 404, 457
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	123, 299, 742
BspACI	CCGC	5 cut(s)	487, 509, 597, 722, 802
BspCNI	CTCAG	1 cut(s)	739
BspDI	ATCGAT	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	737
BspTNI	GGTCTC	4 cut(s)	229, 278, 404, 457
BsrI	ACTGG	5 cut(s)	218, 265, 319, 378, 469
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	123, 299, 742
BssNI	GRCGYC	3 cut(s)	5, 265, 383
BssSI	CACGAG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	481
Bst6I	CTCTTC	6 cut(s)	125, 163, 233, 282, 341, 408
BstACI	GRCGYC	3 cut(s)	5, 265, 383
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	627, 747
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	1 cut(s)	593
BstFNI	CGCG	1 cut(s)	489
BstKTI	GATC	3 cut(s)	126, 302, 745
BstMAI	GTCTC	4 cut(s)	229, 278, 404, 457
BstMBI	GATC	3 cut(s)	123, 299, 742
BstMCI	CGRYCG	3 cut(s)	126, 201, 205
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 574, 583, 605, 661
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	31, 592, 610, 709
BstV2I	GAAGAC	2 cut(s)	263, 325
Bsu15I	ATCGAT	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	593
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	484, 795, 822
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	4 cut(s)	26, 254, 372, 583
Csp6I	GTAC	1 cut(s)	308
CviJI	RGCY	9 cut(s)	17, 44, 95, 479, 515, 636, 700, 736, 767
CviKI_1	RGCY	9 cut(s)	17, 44, 95, 479, 515, 636, 700, 736, 767
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	627, 747
DpnI	GATC	3 cut(s)	125, 301, 744
DpnII	GATC	3 cut(s)	123, 299, 742
DriI	GACNNNNNGTC	1 cut(s)	264
Eam1104I	CTCTTC	6 cut(s)	125, 163, 233, 282, 341, 408
Eam1105I	GACNNNNNGTC	1 cut(s)	264
EarI	CTCTTC	6 cut(s)	125, 163, 233, 282, 341, 408
EciI	GGCGGA	1 cut(s)	586
Ecl136II	GAGCTC	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	738
Eco31I	GGTCTC	4 cut(s)	229, 278, 404, 457
Eco47I	GGWCC	3 cut(s)	484, 795, 822
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	4 cut(s)	275, 324, 383, 461
Eco88I	CYCGRG	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	736
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	738
FaiI	YATR	5 cut(s)	651, 691, 693, 714, 758
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	90
FauI	CCCGC	2 cut(s)	502, 809
Fnu4HI	GCNGC	5 cut(s)	45, 606, 624, 698, 723
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	5 cut(s)	45, 606, 624, 698, 723
GluI	GCNGC	5 cut(s)	45, 606, 624, 698, 723
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	4 cut(s)	26, 254, 372, 583
Hin1I	GRCGYC	3 cut(s)	5, 265, 383
HinfI	GANTC	2 cut(s)	30, 645
HpaII	CCGG	1 cut(s)	23
Hpy188I	TCNGA	9 cut(s)	232, 255, 281, 304, 340, 363, 370, 407, 705
Hpy188III	TCNNGA	5 cut(s)	23, 70, 87, 127, 746
Hpy99I	CGWCG	3 cut(s)	251, 300, 426
HpyAV	CCTTC	3 cut(s)	67, 786, 806
HpyCH4IV	ACGT	5 cut(s)	5, 246, 295, 354, 421
HpyCH4V	TGCA	3 cut(s)	502, 674, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 574, 583, 605, 661
HpyF3I	CTNAG	2 cut(s)	627, 747
HpySE526I	ACGT	5 cut(s)	5, 246, 295, 354, 421
Hsp92I	GRCGYC	3 cut(s)	5, 265, 383
Kpn2I	TCCGGA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	123, 299, 742
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	4 cut(s)	31, 592, 610, 709
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	5 cut(s)	5, 246, 295, 354, 421
MalI	GATC	3 cut(s)	125, 301, 744
MboI	GATC	3 cut(s)	123, 299, 742
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	4 cut(s)	587, 675, 680, 759
MlyI	GAGTC	2 cut(s)	39, 639
MroI	TCCGGA	1 cut(s)	22
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	481
Mva1269I	GAATGC	2 cut(s)	525, 757
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	5 cut(s)	186, 574, 583, 605, 661
NdeII	GATC	3 cut(s)	123, 299, 742
NlaIV	GGNNCC	1 cut(s)	485
PctI	GAATGC	2 cut(s)	525, 757
PkrI	GCNGC	5 cut(s)	46, 607, 625, 699, 724
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	2 cut(s)	38, 639
PpsI	GAGTC	2 cut(s)	38, 639
PpuMI	RGGWCCY	1 cut(s)	795
PsiI	TTATAA	1 cut(s)	714
Psp124BI	GAGCTC	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	484, 795, 822
PspPPI	RGGWCCY	1 cut(s)	795
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	738
SatI	GCNGC	5 cut(s)	45, 606, 624, 698, 723
Sau3AI	GATC	3 cut(s)	123, 299, 742
Sau96I	GGNCC	3 cut(s)	484, 795, 822
SchI	GAGTC	2 cut(s)	39, 639
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	1 cut(s)	661
SinI	GGWCC	3 cut(s)	484, 795, 822
Sse9I	AATT	4 cut(s)	587, 675, 680, 759
SsiI	CCGC	5 cut(s)	487, 509, 597, 722, 802
SstI	GAGCTC	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	479
TaiI	ACGT	5 cut(s)	8, 249, 298, 357, 424
TaqI	TCGA	5 cut(s)	122, 126, 298, 424, 475
TaqII	GACCGA	3 cut(s)	215, 219, 239
TasI	AATT	4 cut(s)	587, 675, 680, 759
TauI	GCSGC	1 cut(s)	725
TseI	GCWGC	4 cut(s)	44, 605, 623, 697
VpaK11BI	GGWCC	3 cut(s)	484, 795, 822
XagI	CCTNNNNNAGG	1 cut(s)	810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.