RchiOBHm_Chr2g0117301

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
29535193 .. 29537657
2465 bp
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UTR
Exon/CDS
Intron
PRQ49026

Sequence Viewer

Length: 363 bp
ATGGGCCTCCAACTGTTTGCTCTCCTTTTTCTTTACTTCCTTTTTTTTTTTTTCAAAAATGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCACTCTTTTGAAGAGAAATATAAGCTCTTTGCTGGCCAGAAAGAGGGGAACTGTATTGGGAAGATGTGATATGATAGCATATGTGGGTAGTGTAGATGGAACGAATAAATATATCTTTGAGAGAGCTAGGTGTGAGGAGCTGAAGAAATCTAGAAGAAAAGCTATGGAGGCTATTGAGAATGAAGAAGAAGAAGAGAGAGAGAGGGAAAAACTGATTATTGGAAATTCAAGGTAG

Protein Analysis

120

Amino Acids

13.9

Weight (kDa)

9.07

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 3 cut(s) 55, 139, 357
AluBI AGCT 4 cut(s) 153, 254, 268, 290
AluI AGCT 4 cut(s) 153, 254, 268, 290
AlwI GGATC 1 cut(s) 70
AoxI GGCC 2 cut(s) 4, 162
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 4, 122
AvaII GGWCC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 164
BccI CCATC 1 cut(s) 218
BfaI CTAG 2 cut(s) 255, 279
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 4, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 6, 164
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 2 cut(s) 6, 164
Bsp143I GATC 1 cut(s) 62
BspANI GGCC 2 cut(s) 6, 164
BspPI GGATC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 73
BssMI GATC 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 15, 95, 181
Bst6I CTCTTC 2 cut(s) 134, 315
BstC8I GCNNGC 1 cut(s) 162
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 2 cut(s) 6, 164
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 4, 122
Csp6I GTAC 1 cut(s) 76
CviJI RGCY 7 cut(s) 6, 153, 164, 254, 268, 290, 299
CviKI_1 RGCY 7 cut(s) 6, 153, 164, 254, 268, 290, 299
CviQI GTAC 1 cut(s) 76
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 134, 315
EarI CTCTTC 2 cut(s) 134, 315
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 122
FaiI YATR 6 cut(s) 149, 200, 208, 210, 240, 293
FauNDI CATATG 1 cut(s) 208
FspBI CTAG 2 cut(s) 255, 279
HaeIII GGCC 2 cut(s) 6, 164
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 3 cut(s) 15, 95, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 3 cut(s) 86, 146, 178
MaeI CTAG 2 cut(s) 255, 279
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 9 cut(s) 128, 151, 201, 283, 294, 323, 326, 329, 332
MflI RGATCY 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 2 cut(s) 84, 352
MluNI TGGCCA 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 7 cut(s) 17, 105, 135, 165, 256, 289, 324
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
PspPI GGNCC 2 cut(s) 4, 122
PspPPI RGGWCCY 1 cut(s) 122
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 4, 122
SetI ASST 7 cut(s) 127, 155, 256, 260, 270, 292, 362
SgeI CNNG 5 cut(s) 85, 173, 177, 267, 291
SinI GGWCC 1 cut(s) 122
Sse9I AATT 2 cut(s) 84, 352
SspMI CTAG 2 cut(s) 255, 279
TaaI ACNGT 3 cut(s) 15, 95, 181
TasI AATT 2 cut(s) 84, 352
TatI WGTACW 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 352
XbaI TCTAGA 1 cut(s) 278
XspI CTAG 2 cut(s) 255, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.