Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

28519113 .. 28523281

Gene Structure 4169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACGTGGTTGAGAAATTCGGAGAGCTTCGCCGGAGCTTCTTCATCAGATGCATGTGGCAAGAAATTTCAGAATGTTACAATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCTTTTGATTTCTTGCCTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCAGGAGGCATTGCTGTTTCACTCATTCGTGTTCCAACGGAGGGCAATTCACATCTGCCTCTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGGATATGGATCATTTTTATTGCGAGATTTACCATTTGATGCAATTCAATTTTGTCTATATGAGAAGCTTCGGATAGGTTATAAAGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTTGCAGGTACTTAGCTTTCGACTCTTCTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

171

Amino Acids

18.55

Weight (kDa)

8.76

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	51 - 140	4.8e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	471
AciI	CCGC	2 cut(s)	91, 344
AclWI	GGATC	2 cut(s)	361, 443
AcsI	RAATTY	2 cut(s)	16, 65
AfaI	GTAC	2 cut(s)	178, 485
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	197, 331, 392
AjiI	CACGTC	1 cut(s)	6
AluBI	AGCT	8 cut(s)	27, 38, 182, 203, 412, 442, 473, 491
AluI	AGCT	8 cut(s)	27, 38, 182, 203, 412, 442, 473, 491
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	361, 443
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	16, 65
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmgBI	CACGTC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	40, 113, 373
Bpu10I	CCTNAGC	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	353, 448
BspACI	CCGC	2 cut(s)	91, 344
BspCNI	CTCAG	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	361, 443
BsrDI	GCAATG	1 cut(s)	249
BssMI	GATC	2 cut(s)	353, 448
Bst6I	CTCTTC	2 cut(s)	306, 505
BstC8I	GCNNGC	2 cut(s)	116, 240
BstDEI	CTNAG	3 cut(s)	318, 453, 487
BstKTI	GATC	2 cut(s)	356, 451
BstMBI	GATC	2 cut(s)	353, 448
BstNSI	RCATGY	2 cut(s)	57, 118
BstV1I	GCAGC	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	116, 240
Csp6I	GTAC	2 cut(s)	177, 484
CviAII	CATG	2 cut(s)	54, 115
CviQI	GTAC	2 cut(s)	177, 484
DdeI	CTNAG	3 cut(s)	318, 453, 487
DpnI	GATC	2 cut(s)	355, 450
DpnII	GATC	2 cut(s)	353, 448
Eam1104I	CTCTTC	2 cut(s)	306, 505
EarI	CTCTTC	2 cut(s)	306, 505
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	2 cut(s)	57, 118
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	2 cut(s)	53, 114
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	2 cut(s)	57, 118
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	2 cut(s)	336, 497
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	4 cut(s)	22, 49, 72, 417
Hpy188III	TCNNGA	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	6 cut(s)	53, 104, 118, 238, 386, 480
HpyF3I	CTNAG	3 cut(s)	318, 453, 487
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	57, 118
Kzo9I	GATC	2 cut(s)	353, 448
LmnI	GCTCC	2 cut(s)	35, 470
LpnPI	CCDG	8 cut(s)	46, 104, 156, 168, 224, 228, 465, 466
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	3 cut(s)	40, 113, 373
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	355, 450
MboI	GATC	2 cut(s)	353, 448
MboII	GAAGA	3 cut(s)	33, 293, 492
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	6 cut(s)	16, 65, 286, 387, 392, 465
MlyI	GAGTC	2 cut(s)	330, 491
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	6 cut(s)	151, 167, 239, 274, 309, 316
Mph1103I	ATGCAT	1 cut(s)	55
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	463
NdeII	GATC	2 cut(s)	353, 448
NlaIII	CATG	2 cut(s)	57, 118
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	2 cut(s)	57, 118
PaeI	GCATGC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	2 cut(s)	330, 491
PpsI	GAGTC	2 cut(s)	330, 491
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	444
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	178, 485
RsaNI	GTAC	2 cut(s)	177, 484
SacI	GAGCTC	1 cut(s)	444
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	353, 448
SchI	GAGTC	2 cut(s)	330, 491
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	3 cut(s)	40, 113, 373
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	6 cut(s)	16, 65, 286, 387, 392, 465
SsiI	CCGC	2 cut(s)	91, 344
SstI	GAGCTC	1 cut(s)	444
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	495
TasI	AATT	6 cut(s)	16, 65, 286, 387, 392, 465
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	33, 498
TspGWI	ACGGA	1 cut(s)	293
XapI	RAATTY	2 cut(s)	16, 65
XceI	RCATGY	2 cut(s)	57, 118
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.