Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

52767369 .. 52783696

Gene Structure 16328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTTCCTGGGAACGGTTTTCTTGTATATTTTACATTATGTGAAGTACTGGTTTACTGCGGGAGCTTGTGGAGGCATTGCTGCTTCACCATTCGTGTTCCAACAGAGGTTGTAAAGCAAAGGATGCAAACAGGGCAATTCACATCCGCCTCTGCTGCTGTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGAGTCGCAAAGAGAGAGTTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGTTATAACCACTCCCCTTGATGTGATTAAAACTAGACTAATGGTACAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGTCGGTTCAATTTTTTTGGTGTTGTCGAGAGAACAAAGCGCTTACTTGTTCAGGGACGACCAACAGTTGGTGAAGACACGAAGCAGGACTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

172

Amino Acids

19.12

Weight (kDa)

9.57

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 149	7e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AarI	CACCTGC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	377
AciI	CCGC	3 cut(s)	60, 147, 375
AclWI	GGATC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	48, 318, 323
AfeI	AGCGCT	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	14, 487
AgsI	TTSAA	4 cut(s)	189, 223, 385, 429
AjnI	CCWGG	1 cut(s)	7
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	2 cut(s)	66, 251
AluI	AGCT	2 cut(s)	66, 251
AlwI	GGATC	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	460
ApeKI	GCWGC	3 cut(s)	81, 155, 172
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	368, 395
AsuHPI	GGTGA	2 cut(s)	79, 502
AvaII	GGWCC	2 cut(s)	368, 395
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	3 cut(s)	68, 142, 159
BciT130I	CCWGG	1 cut(s)	9
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	82, 156, 173
BlsI	GCNGC	3 cut(s)	83, 157, 174
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	2 cut(s)	368, 395
BmgT120I	GGNCC	2 cut(s)	368, 395
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 487
Bse1I	ACTGG	2 cut(s)	54, 274
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	129, 143
BseLI	CCNNNNNNNGG	2 cut(s)	14, 487
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	54, 274
BseXI	GCAGC	3 cut(s)	68, 142, 159
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	14, 487
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	3 cut(s)	60, 147, 375
BspCNI	CTCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	54, 274
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	4 cut(s)	17, 321, 341, 486
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	176, 231
BstF5I	GGATG	2 cut(s)	129, 143
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 133, 155, 161
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	68, 142, 159
BstV2I	GAAGAC	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	129, 143
BveI	ACCTGC	1 cut(s)	248
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	368, 395
Csp6I	GTAC	3 cut(s)	47, 317, 322
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviJI	RGCY	3 cut(s)	66, 185, 251
CviKI_1	RGCY	3 cut(s)	66, 185, 251
CviQI	GTAC	3 cut(s)	47, 317, 322
DdeI	CTNAG	2 cut(s)	176, 231
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	368, 395
Eco47III	AGCGCT	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	7
FaiI	YATR	5 cut(s)	28, 40, 200, 242, 278
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	488
FauI	CCCGC	2 cut(s)	53, 382
Fnu4HI	GCNGC	3 cut(s)	82, 156, 173
FokI	GGATG	2 cut(s)	130, 136
Fsp4HI	GCNGC	3 cut(s)	82, 156, 173
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	82, 156, 173
GsuI	CTGGAG	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	462
HhaI	GCGC	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	194, 204
HphI	GGTGA	2 cut(s)	79, 502
Hpy166II	GTNNAC	2 cut(s)	55, 337
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	230, 447
Hpy8I	GTNNAC	2 cut(s)	55, 337
HpyAV	CCTTC	2 cut(s)	359, 379
HpyCH4III	ACNGT	4 cut(s)	17, 321, 341, 486
HpyCH4V	TGCA	3 cut(s)	127, 257, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 133, 155, 161
HpyF3I	CTNAG	2 cut(s)	176, 231
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	63, 248
LpnPI	CCDG	8 cut(s)	21, 35, 117, 243, 243, 255, 457, 490
Lsp1109I	GCAGC	3 cut(s)	68, 142, 159
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	306
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	377
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	374, 505
MluCI	AATT	4 cut(s)	137, 243, 330, 429
MlyI	GAGTC	2 cut(s)	188, 213
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	6 cut(s)	66, 100, 160, 174, 351, 381
MseI	TTAA	2 cut(s)	266, 300
MspR9I	CCNGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	124, 133, 155, 161
NdeII	GATC	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	248
PctI	GAATGC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	83, 157, 174
PleI	GAGTC	2 cut(s)	188, 212
PpsI	GAGTC	2 cut(s)	188, 212
PpuMI	RGGWCCY	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	368, 395
PspPPI	RGGWCCY	1 cut(s)	368
RsaI	GTAC	3 cut(s)	48, 318, 323
RsaNI	GTAC	3 cut(s)	47, 317, 322
SaqAI	TTAA	2 cut(s)	266, 300
SatI	GCNGC	3 cut(s)	82, 156, 173
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	2 cut(s)	368, 395
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	2 cut(s)	188, 213
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	5 cut(s)	68, 111, 253, 262, 373
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	2 cut(s)	368, 395
Sse9I	AATT	4 cut(s)	137, 243, 330, 429
SsiI	CCGC	3 cut(s)	60, 147, 375
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	4 cut(s)	17, 321, 341, 486
TaqI	TCGA	1 cut(s)	446
TasI	AATT	4 cut(s)	137, 243, 330, 429
TatI	WGTACW	2 cut(s)	46, 321
Tru1I	TTAA	2 cut(s)	266, 300
Tru9I	TTAA	2 cut(s)	266, 300
TseI	GCWGC	3 cut(s)	81, 155, 172
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	368, 395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405
XspI	CTAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.