Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

30534619 .. 30537258

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCCTCCTCTTGAATGCGTCTATAACGAGCTTTTTGCAGGTGCATTAACTGGAGTTATAACCACTGCCCTTGATGTGTTTAAAACTAGACTAATGGTACAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAAAGTGCTGTGGATAGGGATTGGCGGTTCAATTTTTTTGGTGTTTTCGAGAGAACAAAGCACTTATTTGCTTAGGGACGACCAACAGTTGGTGAAGATACAAAGGCCCCATTTGGGATTGTTTCGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

103

Amino Acids

11.5

Weight (kDa)

8.68

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	11 - 81	1.1e-13	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	158
AciI	CCGC	2 cut(s)	156, 204
AfaI	GTAC	2 cut(s)	99, 104
AfiI	CCNNNNNNNGG	2 cut(s)	268, 293
AgsI	TTSAA	3 cut(s)	14, 166, 210
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AoxI	GGCC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	149, 176, 285
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	149, 176
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	149, 176
BmgT120I	GGNCC	3 cut(s)	149, 176, 285
BmiI	GGNNCC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 293
Bse1I	ACTGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	268, 293
BseNI	ACTGG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	268, 293
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	156, 204
BspANI	GGCC	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	287
BspMI	ACCTGC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	102, 122, 267
BstDEI	CTNAG	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	149, 176, 285
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	98, 103
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviJI	RGCY	2 cut(s)	31, 286
CviKI_1	RGCY	2 cut(s)	31, 286
CviQI	GTAC	2 cut(s)	98, 103
DdeI	CTNAG	1 cut(s)	251
DraI	TTTAAA	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	149, 176
EcoO109I	RGGNCCY	2 cut(s)	149, 285
FaiI	YATR	2 cut(s)	24, 59
FaqI	GGGAC	1 cut(s)	269
FauI	CCCGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	286
HgaI	GACGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	11, 228
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	140, 160
HpyCH4III	ACNGT	3 cut(s)	102, 122, 267
HpyCH4V	TGCA	2 cut(s)	38, 44
HpyF3I	CTNAG	1 cut(s)	251
LpnPI	CCDG	2 cut(s)	24, 36
MaeI	CTAG	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	158
MboII	GAAGA	2 cut(s)	155, 286
MluCI	AATT	2 cut(s)	111, 210
MnlI	CCTC	4 cut(s)	15, 18, 132, 162
MseI	TTAA	3 cut(s)	47, 81, 310
Mva1269I	GAATGC	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	29
PctI	GAATGC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	3 cut(s)	149, 176, 285
PspPPI	RGGWCCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	99, 104
RsaNI	GTAC	2 cut(s)	98, 103
SaqAI	TTAA	3 cut(s)	47, 81, 310
Sau96I	GGNCC	3 cut(s)	149, 176, 285
SetI	ASST	3 cut(s)	33, 43, 154
SgeI	CNNG	8 cut(s)	23, 40, 51, 63, 83, 99, 167, 240
SinI	GGWCC	2 cut(s)	149, 176
Sse9I	AATT	2 cut(s)	111, 210
SsiI	CCGC	2 cut(s)	156, 204
SspMI	CTAG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	102, 122, 267
TaqI	TCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	111, 210
TatI	WGTACW	1 cut(s)	102
Tru1I	TTAA	3 cut(s)	47, 81, 310
Tru9I	TTAA	3 cut(s)	47, 81, 310
TscAI	CASTG	1 cut(s)	70
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	149, 176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.