Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

29532039 .. 29532312

Gene Structure 274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAATTTATGGTCCCCTCAAGTCATTACAAATCAGGGGTATTGGACCAAAAGTGCTGTGGATAGGGATTGGCGGTTCAATTTTTTTGGTGTTTTCGAGAGAACAAAGCGCTTATTTGCTCAGGGACGACCAACAGTTGGTGAAGACACAAAGGCTCCATTTGGGATTGCTTCGCATTTAAAAAAACTCAACTTTTGTTCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

69

Amino Acids

8.07

Weight (kDa)

10.13

Isoelectric Point (pI)

13.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	1 cut(s)	73
AcsI	RAATTY	2 cut(s)	4, 203
AfeI	AGCGCT	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	79, 201
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
Aor51HI	AGCGCT	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	4, 203
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	12, 45
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	12, 45
BbsI	GAAGAC	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	112
Bme18I	GGWCC	2 cut(s)	12, 45
BmgT120I	GGNCC	2 cut(s)	12, 45
BmiI	GGNNCC	2 cut(s)	14, 156
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	14, 156
Bst4CI	ACNGT	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	12, 45
CviJI	RGCY	1 cut(s)	155
CviKI_1	RGCY	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	120
DraI	TTTAAA	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	12, 45
Eco47III	AGCGCT	1 cut(s)	110
FaiI	YATR	1 cut(s)	10
FaqI	GGGAC	1 cut(s)	138
GlaI	GCGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	112
HhaI	GCGC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	120
HspAI	GCGC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	20, 107
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	3 cut(s)	4, 79, 203
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	14, 156
PflMI	CCANNNNNTGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	14, 156
PspPI	GGNCC	2 cut(s)	12, 45
SaqAI	TTAA	1 cut(s)	179
Sau96I	GGNCC	2 cut(s)	12, 45
SgeI	CNNG	4 cut(s)	32, 47, 109, 134
SinI	GGWCC	2 cut(s)	12, 45
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	3 cut(s)	4, 79, 203
SsiI	CCGC	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	4, 79, 203
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	12, 45
XapI	RAATTY	2 cut(s)	4, 203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.