Rorug02G0209200

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
19647272 .. 19651007
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0209200.1

Sequence Viewer

Length: 1812 bp
ATGAGGAATGCCCACCAGGTGTTTGTGAAAATGCCTGAGAGAGACTCAGTGGCCTCCACACCCCAACAATCCTCAATTCTCCGAAGATCTCCCAGATTTCTTCACCCCAAGACCACTCCAGAACCACAGAAACTCGCCACACCTCGCCGGAAGCCTCAGAGAAAGACCGCTGCAGACTCTGAAAACCCGAAAACCCCCAAATCCAAATTCAGAAGGAACGGGGCAAAAGCTTTGGATTGTAGACTTCTTGAGAAGGGTAACAGTCCAGAACCGGAGCAGCCGGCCACGATTCTCCGAAAGTCGCAGCGGCTTGTGGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCCAATTTAAATCTAGAAGCGACAATGTGGTACGCTCTTTGAATCTTTCGATTGGCTCGAAGAAATTGAGTAAAGCCAATGCTGGGTCGAGAGAATCTAAGGTTTTGAATCAGGAGGTGGTCGTGGTGGTGGTGGATGAAGATGAGGATTCCTCCCCAGAGGGAGTCTCAAAGAAATTGGGGGAATCTCATTATGGGTCTCGTAATTGCGAAAAATCGAGTTCTGGGTCAAGAAAAGCTCCAAGATTGAACAATGTCAGTGATGGGTTTCAGACTCCTAGACGATCTTCGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAGACTGATAAGGCCACTAGTGGTAGATCTAAGAGTAAGTCCAAAATTTCTTTGGATAGAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGCGAAATTGTTTTGGAAAAGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTCGGTGGTGTTGAAACAGTTAGTGTGGAAGGTGGAGAGGGCAAAGCTCAAGAGTTAGATTGCGGAGATAAAAAAGTTGCGGTTAGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTCGCCAAAGGGTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCGACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGGTTCCTGGAAAGTCTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCACCCCAACCTCGTCCTCGGTCAAGGGCAAAGATAACTACAAATTCATCCCCCCTTGGAGGATTTTCACTCTCTGCAAGTAAATTGCTTAATCCCGTTGAGTCAAAGGCTAAAAGACATGGCTGCAATAAACAGAGAAGCCATCTTGCGCAGAAAGCTGTCAGAGCGTTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCTAGTGTAGGTCCATCTACTGAGACTTCTCAGCCAAGTGTTATACCTTCTACTCCAACAAATTCACAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGCGGGTCATAAGAAGCCCCTCTCAAGGTTTAGTAACTCATCTGAGACATCTCTTGTTAGTCCTCCGGTATTAAAGCAGGTCAAGAACAAGGTCTTGCATGAGAAATATATTGACCAATTGCATATCAGGGAAGCTAAGAGAAAAACATTAGCTAAAAACACTAAAAAATCCACTGGTGGAATCGATGAAACAAAAAAGAGTCATATTCAGGAAGTGGATCTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAGCTCAAACATCTGCAGGAAAACTCTTCGGAGTCGGATGATGATGGAATTGCAAGGGATGATGAGGAAGATGAAGATGAGACTTTGTAG

Protein Analysis

603

Amino Acids

66.58

Weight (kDa)

9.97

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1260
Acc36I ACCTGC 2 cut(s) 1030, 1519
AccB7I CCANNNNNTGG 1 cut(s) 966
AccI GTMKAC 1 cut(s) 241
AciI CCGC 5 cut(s) 168, 307, 897, 914, 1454
AclWI GGATC 1 cut(s) 1677
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 5 cut(s) 206, 726, 781, 1153, 1402
AcyI GRCGYC 1 cut(s) 1022
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 2 cut(s) 390, 1335
AfiI CCNNNNNNNGG 6 cut(s) 441, 966, 1025, 1169, 1349, 1476
AgsI TTSAA 5 cut(s) 322, 400, 466, 607, 848
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 4 cut(s) 15, 1024, 1057, 1692
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 9 cut(s) 230, 596, 773, 881, 1001, 1268, 1586, 1604, 1726
AluI AGCT 9 cut(s) 230, 596, 773, 881, 1001, 1268, 1586, 1604, 1726
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 7 cut(s) 36, 529, 561, 754, 1358, 1490, 1796
Alw44I GTGCAC 1 cut(s) 1301
AlwI GGATC 1 cut(s) 1677
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 4 cut(s) 51, 282, 693, 987
ApaLI GTGCAC 1 cut(s) 1301
ApeKI GCWGC 4 cut(s) 170, 277, 304, 1233
ApoI RAATTY 5 cut(s) 206, 726, 781, 1153, 1402
AspLEI GCGC 1 cut(s) 1261
AspS9I GGNCC 1 cut(s) 1352
AsuHPI GGTGA 2 cut(s) 95, 829
AsuNHI GCTAGC 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 1352
BaeGI GKGCMC 1 cut(s) 1305
Bbv12I GWGCWC 1 cut(s) 1305
BbvI GCAGC 4 cut(s) 157, 289, 316, 1220
BccI CCATC 5 cut(s) 614, 761, 1260, 1363, 1760
BciT130I CCWGG 4 cut(s) 17, 1026, 1059, 1694
BciVI GTATCC 1 cut(s) 1083
BcoDI GTCTC 7 cut(s) 36, 529, 561, 754, 1358, 1490, 1796
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 5 cut(s) 372, 636, 699, 1010, 1344
BfmI CTRYAG 2 cut(s) 171, 1736
BfuAI ACCTGC 2 cut(s) 1030, 1519
BfuI GTATCC 1 cut(s) 1083
BglII AGATCT 4 cut(s) 86, 329, 707, 1321
BisI GCNGC 5 cut(s) 171, 278, 305, 308, 1234
BlsI GCNGC 5 cut(s) 172, 279, 306, 309, 1235
BmcAI AGTACT 1 cut(s) 1335
Bme1390I CCNGG 4 cut(s) 17, 1026, 1059, 1694
Bme18I GGWCC 1 cut(s) 1352
BmgT120I GGNCC 1 cut(s) 1352
BmiI GGNNCC 1 cut(s) 1056
BmrFI CCNGG 4 cut(s) 17, 1026, 1059, 1694
BmsI GCATC 2 cut(s) 1693, 1702
BmtI GCTAGC 1 cut(s) 1013
BplI GAGNNNNNCTC 8 cut(s) 29, 61, 494, 526, 509, 541, 734, 766
BpmI CTGGAG 1 cut(s) 102
BpuEI CTTGAG 4 cut(s) 269, 867, 1358, 1459
Bsa29I ATCGAT 1 cut(s) 1635
BsaHI GRCGYC 1 cut(s) 1022
BsaI GGTCTC 2 cut(s) 561, 754
BsaJI CCNNGG 3 cut(s) 1127, 1165, 1692
BsaWI WCCGGW 2 cut(s) 271, 1516
BsaXI ACNNNNNCTCC 4 cut(s) 762, 792, 933, 963
Bsc4I CCNNNNNNNGG 6 cut(s) 441, 966, 1025, 1169, 1349, 1476
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 1056, 1630
BseBI CCWGG 4 cut(s) 17, 1026, 1059, 1694
BseCI ATCGAT 1 cut(s) 1635
BseDI CCNNGG 3 cut(s) 1127, 1165, 1692
BseGI GGATG 4 cut(s) 499, 1157, 1765, 1786
BseLI CCNNNNNNNGG 6 cut(s) 441, 966, 1025, 1169, 1349, 1476
BseMII CTCAG 8 cut(s) 27, 60, 170, 765, 1353, 1385, 1485, 1664
BseNI ACTGG 2 cut(s) 1056, 1630
BseSI GKGCMC 1 cut(s) 1305
BseXI GCAGC 4 cut(s) 157, 289, 316, 1220
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1053
BshFI GGCC 4 cut(s) 53, 284, 695, 989
BshVI ATCGAT 1 cut(s) 1635
BsiHKAI GWGCWC 1 cut(s) 1305
BsiSI CCGG 4 cut(s) 148, 272, 281, 1517
BslI CCNNNNNNNGG 6 cut(s) 441, 966, 1025, 1169, 1349, 1476
BsmAI GTCTC 7 cut(s) 36, 529, 561, 754, 1358, 1490, 1796
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 4 cut(s) 53, 284, 695, 989
Bso31I GGTCTC 2 cut(s) 561, 754
Bsp1286I GDGCHC 1 cut(s) 1305
Bsp143I GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
BspACI CCGC 5 cut(s) 168, 307, 897, 914, 1454
BspANI GGCC 4 cut(s) 53, 284, 695, 989
BspCNI CTCAG 8 cut(s) 28, 59, 169, 764, 1354, 1384, 1486, 1665
BspDI ATCGAT 1 cut(s) 1635
BspLI GGNNCC 1 cut(s) 1056
BspMAI CTGCAG 2 cut(s) 175, 1740
BspMI ACCTGC 2 cut(s) 1030, 1519
BspOI GCTAGC 1 cut(s) 1013
BspPI GGATC 1 cut(s) 1677
BspTNI GGTCTC 2 cut(s) 561, 754
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 2 cut(s) 1056, 1630
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 1127, 1165, 1692
BssMI GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
BssNI GRCGYC 1 cut(s) 1022
BssT1I CCWWGG 1 cut(s) 1165
Bst2UI CCWGG 4 cut(s) 17, 1026, 1059, 1694
Bst4CI ACNGT 2 cut(s) 263, 853
Bst6I CTCTTC 2 cut(s) 920, 1753
BstACI GRCGYC 1 cut(s) 1022
BstAPI GCANNNNNTGC 2 cut(s) 1688, 1712
BstC8I GCNNGC 2 cut(s) 282, 1011
BstENI CCTNNNNNAGG 1 cut(s) 1347
BstF5I GGATG 4 cut(s) 499, 1157, 1765, 1786
BstHHI GCGC 1 cut(s) 1261
BstKTI GATC 6 cut(s) 89, 332, 644, 710, 1324, 1672
BstMAI GTCTC 7 cut(s) 36, 529, 561, 754, 1358, 1490, 1796
BstMBI GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
BstMWI GCNNNNNNNGC 5 cut(s) 1015, 1265, 1274, 1688, 1712
BstNI CCWGG 4 cut(s) 17, 1026, 1059, 1694
BstSCI CCNGG 4 cut(s) 15, 1024, 1057, 1692
BstSFI CTRYAG 2 cut(s) 171, 1736
BstSLI GKGCMC 1 cut(s) 1305
BstV1I GCAGC 4 cut(s) 157, 289, 316, 1220
BstX2I RGATCY 5 cut(s) 86, 329, 707, 1321, 1669
BstYI RGATCY 5 cut(s) 86, 329, 707, 1321, 1669
Bsu15I ATCGAT 1 cut(s) 1635
BsuI GTATCC 1 cut(s) 1083
BsuRI GGCC 4 cut(s) 53, 284, 695, 989
BsuTUI ATCGAT 1 cut(s) 1635
BtsCI GGATG 4 cut(s) 499, 1157, 1765, 1786
BtsIMutI CAGTG 3 cut(s) 54, 622, 1623
BveI ACCTGC 2 cut(s) 1030, 1519
Cac8I GCNNGC 2 cut(s) 282, 1011
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 1261
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 1352
ClaI ATCGAT 1 cut(s) 1635
CseI GACGC 1 cut(s) 1030
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 389, 1334
CviAII CATG 2 cut(s) 1229, 1550
CviQI GTAC 2 cut(s) 389, 1334
DpnI GATC 6 cut(s) 88, 331, 643, 709, 1323, 1671
DpnII GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
DraI TTTAAA 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 920, 1753
EarI CTCTTC 2 cut(s) 920, 1753
Eco130I CCWWGG 1 cut(s) 1165
Eco31I GGTCTC 2 cut(s) 561, 754
Eco47I GGWCC 1 cut(s) 1352
EcoNI CCTNNNNNAGG 1 cut(s) 1347
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 4 cut(s) 15, 1024, 1057, 1692
EcoT14I CCWWGG 1 cut(s) 1165
ErhI CCWWGG 1 cut(s) 1165
FaeI CATG 2 cut(s) 1232, 1553
FatI CATG 2 cut(s) 1228, 1549
FauI CCCGC 1 cut(s) 1447
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 5 cut(s) 171, 278, 305, 308, 1234
FokI GGATG 4 cut(s) 506, 1144, 1772, 1793
Fsp4HI GCNGC 5 cut(s) 171, 278, 305, 308, 1234
FspBI CTAG 5 cut(s) 372, 636, 699, 1010, 1344
FspI TGCGCA 1 cut(s) 1260
GlaI GCGC 1 cut(s) 1260
GluI GCNGC 5 cut(s) 171, 278, 305, 308, 1234
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 4 cut(s) 53, 284, 695, 989
HapII CCGG 4 cut(s) 148, 272, 281, 1517
HgaI GACGC 1 cut(s) 1030
HhaI GCGC 1 cut(s) 1261
Hin1I GRCGYC 1 cut(s) 1022
Hin1II CATG 2 cut(s) 1232, 1553
Hin6I GCGC 1 cut(s) 1259
HinP1I GCGC 1 cut(s) 1259
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 228
HpaII CCGG 4 cut(s) 148, 272, 281, 1517
HphI GGTGA 2 cut(s) 95, 829
Hpy166II GTNNAC 4 cut(s) 242, 676, 969, 1303
Hpy8I GTNNAC 4 cut(s) 242, 676, 969, 1303
Hpy99I CGWCG 1 cut(s) 1024
HpyAV CCTTC 6 cut(s) 207, 247, 739, 857, 1398, 1436
HpyCH4III ACNGT 2 cut(s) 263, 853
HpyF10VI GCNNNNNNNGC 5 cut(s) 1015, 1265, 1274, 1688, 1712
Hsp92I GRCGYC 1 cut(s) 1022
Hsp92II CATG 2 cut(s) 1232, 1553
HspAI GCGC 1 cut(s) 1259
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
LmnI GCTCC 3 cut(s) 274, 601, 770
Lsp1109I GCAGC 4 cut(s) 157, 289, 316, 1220
LweI GCATC 2 cut(s) 1693, 1702
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 5 cut(s) 372, 636, 699, 1010, 1344
MaeIII GTNAC 2 cut(s) 257, 1484
MalI GATC 6 cut(s) 88, 331, 643, 709, 1323, 1671
MboI GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
MfeI CAATTG 1 cut(s) 1568
MflI RGATCY 5 cut(s) 86, 329, 707, 1321, 1669
MhlI GDGCHC 1 cut(s) 1305
MlyI GAGTC 7 cut(s) 38, 170, 531, 625, 1220, 1660, 1763
MmeI TCCRAC 3 cut(s) 321, 1421, 1737
MroNI GCCGGC 1 cut(s) 280
MseI TTAA 3 cut(s) 366, 1200, 1523
MspA1I CMGCKG 2 cut(s) 170, 307
MspI CCGG 4 cut(s) 148, 272, 281, 1517
MspR9I CCNGG 4 cut(s) 17, 1026, 1059, 1694
MunI CAATTG 1 cut(s) 1568
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 4 cut(s) 17, 1026, 1059, 1694
MwoI GCNNNNNNNGC 5 cut(s) 1015, 1265, 1274, 1688, 1712
NaeI GCCGGC 1 cut(s) 282
NdeII GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
NgoMIV GCCGGC 1 cut(s) 280
NheI GCTAGC 1 cut(s) 1009
NlaIII CATG 2 cut(s) 1232, 1553
NlaIV GGNNCC 1 cut(s) 1056
NsbI TGCGCA 1 cut(s) 1260
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 282
PfeI GAWTC 8 cut(s) 289, 400, 452, 466, 506, 542, 1422, 1632
PflMI CCANNNNNTGG 1 cut(s) 966
PfoI TCCNGGA 1 cut(s) 1057
PkrI GCNGC 5 cut(s) 172, 279, 306, 309, 1235
PleI GAGTC 7 cut(s) 38, 170, 530, 625, 1219, 1659, 1762
PpsI GAGTC 7 cut(s) 38, 170, 530, 625, 1219, 1659, 1762
Psp6I CCWGG 4 cut(s) 15, 1024, 1057, 1692
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 4 cut(s) 15, 1024, 1057, 1692
PspN4I GGNNCC 1 cut(s) 1056
PspPI GGNCC 1 cut(s) 1352
PsrI GAACNNNNNNTAC 2 cut(s) 814, 846
PstI CTGCAG 2 cut(s) 175, 1740
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 5 cut(s) 86, 329, 707, 1321, 1669
RsaI GTAC 2 cut(s) 390, 1335
RsaNI GTAC 2 cut(s) 389, 1334
SaqAI TTAA 3 cut(s) 366, 1200, 1523
SatI GCNGC 5 cut(s) 171, 278, 305, 308, 1234
Sau3AI GATC 6 cut(s) 86, 329, 641, 707, 1321, 1669
Sau96I GGNCC 1 cut(s) 1352
ScaI AGTACT 1 cut(s) 1335
SchI GAGTC 7 cut(s) 38, 170, 531, 625, 1220, 1660, 1763
ScrFI CCNGG 4 cut(s) 17, 1026, 1059, 1694
SduI GDGCHC 1 cut(s) 1305
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 1693, 1702
SfcI CTRYAG 2 cut(s) 171, 1736
SinI GGWCC 1 cut(s) 1352
SmiI ATTTAAAT 1 cut(s) 367
SmlI CTYRAG 4 cut(s) 248, 882, 1337, 1474
SmoI CTYRAG 4 cut(s) 248, 882, 1337, 1474
SpeI ACTAGT 1 cut(s) 698
SsiI CCGC 5 cut(s) 168, 307, 897, 914, 1454
SspMI CTAG 5 cut(s) 372, 636, 699, 1010, 1344
StyD4I CCNGG 4 cut(s) 15, 1024, 1057, 1692
StyI CCWWGG 1 cut(s) 1165
SwaI ATTTAAAT 1 cut(s) 367
TaaI ACNGT 2 cut(s) 263, 853
TaqI TCGA 6 cut(s) 407, 416, 446, 575, 647, 1635
TaqII GACCGA 1 cut(s) 1119
TatI WGTACW 1 cut(s) 1333
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 8 cut(s) 289, 400, 452, 466, 506, 542, 1422, 1632
Tru1I TTAA 3 cut(s) 366, 1200, 1523
Tru9I TTAA 3 cut(s) 366, 1200, 1523
TscAI CASTG 3 cut(s) 54, 622, 1630
TseI GCWGC 4 cut(s) 170, 277, 304, 1233
TspDTI ATGAA 4 cut(s) 510, 1146, 1653, 1809
TspRI CASTG 3 cut(s) 54, 622, 1630
Van91I CCANNNNNTGG 1 cut(s) 966
VneI GTGCAC 1 cut(s) 1301
VpaK11BI GGWCC 1 cut(s) 1352
XagI CCTNNNNNAGG 1 cut(s) 1347
XapI RAATTY 5 cut(s) 206, 726, 781, 1153, 1402
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 5 cut(s) 372, 636, 699, 1010, 1344
ZrmI AGTACT 1 cut(s) 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.