Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

30632121 .. 30661067

Gene Structure 28947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCATATTGGGCACATCTCTTAATCAAGGCACAGTCTACTTACCTTGCCGAACTGGGTGCTCGTGGTGGAGGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTATTACCGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGGGCTTGTGGAGGCATTGCTGCATCACTCATTCGTGTTCCAACGGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCTGCCTCTGCTGCTGTTCGCTTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGCAAAGAGAGAGCTCAATGATCCTGAGAATGCTATAATTATTGGAGCTTTTGTAGGTGCATTAACTGGAGCTATAACCACTCCCCTTGATGTGATTAAAACCAGACTAATGGTACAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGAGGTTCAATCTTTTTTGGTGTTCTCGAGAGAACAAAGCCGTTACTTGCCAAGAGACGAACAACAGTTGGTGAAGACACGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

227

Amino Acids

24.12

Weight (kDa)

9.78

Isoelectric Point (pI)

22.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	68 - 125	9.9e-10	Mitochondrial carrier protein
Mito_carr	PF00153	136 - 215	3.6e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	3 cut(s)	230, 374, 546
AclWI	GGATC	1 cut(s)	389
AfaI	GTAC	2 cut(s)	489, 494
AfeI	AGCGCT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	88, 361, 556, 600
AloI	GAACNNNNNNTCC	2 cut(s)	580, 612
AluBI	AGCT	4 cut(s)	218, 388, 422, 446
AluI	AGCT	4 cut(s)	218, 388, 422, 446
Alw21I	GWGCWC	2 cut(s)	64, 390
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	617
Aor51HI	AGCGCT	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	251, 326, 344
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	539, 566
AsuHPI	GGTGA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	2 cut(s)	539, 566
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	672
Bbv12I	GWGCWC	2 cut(s)	64, 390
BbvI	GCAGC	3 cut(s)	238, 313, 331
BceAI	ACGGC	1 cut(s)	616
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BcoDI	GTCTC	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	4 cut(s)	252, 327, 345, 375
BlsI	GCNGC	4 cut(s)	253, 328, 346, 376
Bme18I	GGWCC	2 cut(s)	539, 566
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	539, 566
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	263, 285
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	60, 445
Bse3DI	GCAATG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	60, 445
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	238, 313, 331
BsiHKAI	GWGCWC	2 cut(s)	64, 390
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	3 cut(s)	16, 64, 390
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	230, 374, 546
BspCNI	CTCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	60, 445
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	4 cut(s)	36, 492, 512, 658
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	206, 348, 399
BstF5I	GGATG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 304, 326
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	238, 313, 331
BstV2I	GAAGAC	1 cut(s)	672
BstXI	CCANNNNNNTGG	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	300
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	539, 566
Csp6I	GTAC	2 cut(s)	488, 493
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviJI	RGCY	9 cut(s)	110, 137, 218, 236, 357, 388, 422, 446, 631
CviKI_1	RGCY	9 cut(s)	110, 137, 218, 236, 357, 388, 422, 446, 631
CviQI	GTAC	2 cut(s)	488, 493
DdeI	CTNAG	3 cut(s)	206, 348, 399
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	539, 566
Eco47III	AGCGCT	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	640
FaiI	YATR	5 cut(s)	7, 162, 372, 410, 449
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	105
FauI	CCCGC	2 cut(s)	223, 553
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	4 cut(s)	252, 327, 345, 375
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	4 cut(s)	252, 327, 345, 375
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	252, 327, 345, 375
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	213
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	2 cut(s)	39, 508
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	6 cut(s)	85, 102, 197, 398, 617, 619
Hpy8I	GTNNAC	2 cut(s)	39, 508
HpyAV	CCTTC	3 cut(s)	82, 530, 550
HpyCH4III	ACNGT	4 cut(s)	36, 492, 512, 658
HpyCH4V	TGCA	4 cut(s)	143, 254, 298, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 304, 326
HpyF3I	CTNAG	3 cut(s)	206, 348, 399
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	419, 443
Lsp1109I	GCAGC	3 cut(s)	238, 313, 331
LweI	GCATC	2 cut(s)	263, 285
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	1 cut(s)	396
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	1 cut(s)	394
MboII	GAAGA	2 cut(s)	545, 677
MhlI	GDGCHC	3 cut(s)	16, 64, 390
MluCI	AATT	5 cut(s)	144, 179, 308, 411, 501
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	133, 296
MnlI	CCTC	8 cut(s)	65, 236, 271, 331, 346, 522, 552, 587
MseI	TTAA	4 cut(s)	23, 185, 437, 471
MspI	CCGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	295, 304, 326
NdeII	GATC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	617
PctI	GAATGC	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	253, 328, 346, 376
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	539, 566
PspPPI	RGGWCCY	1 cut(s)	539
RsaI	GTAC	2 cut(s)	489, 494
RsaNI	GTAC	2 cut(s)	488, 493
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	23, 185, 437, 471
SatI	GCNGC	4 cut(s)	252, 327, 345, 375
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	2 cut(s)	539, 566
SchI	GAGTC	1 cut(s)	360
SduI	GDGCHC	3 cut(s)	16, 64, 390
SfaNI	GCATC	2 cut(s)	263, 285
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	539, 566
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	5 cut(s)	144, 179, 308, 411, 501
SsiI	CCGC	3 cut(s)	230, 374, 546
SstI	GAGCTC	1 cut(s)	390
TaaI	ACNGT	4 cut(s)	36, 492, 512, 658
TaqI	TCGA	1 cut(s)	618
TasI	AATT	5 cut(s)	144, 179, 308, 411, 501
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	377
Tru1I	TTAA	4 cut(s)	23, 185, 437, 471
Tru9I	TTAA	4 cut(s)	23, 185, 437, 471
TseI	GCWGC	3 cut(s)	251, 326, 344
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	539, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XhoI	CTCGAG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.