Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

2784593 .. 2790414

Gene Structure 5822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03010.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCAGGAAGAGAAACCCTTTGATTTCTTACGCACTTTATTTGAGGGTGTCATTGCAGGAGGTACAGCCGGTGTTGTTGTTGAAACAGCTCTATACCCCATTGATACCATAAAGACAAGACTGCAGGCTGCTCGTGGTGGAGGGAAAATAGCCTTTAAGGGGCTTTATTCTGGATTGACTGGAAATCTTGCTGGTGTCTTACCGGCTTCTGCAATTTTTGTTGGAGTGTATGAACCTGCGAAGAAAAAACTGTTGAAGATTTTCCCTGAAAATCTAAGTGCTCTAGCCCATTTTACAGCAGGGGCTTTTGGAGGTATTGCTGCATCACTCGTTCGTGTTCCGACAGAGGTTGTTAAGCAAAGGATGCAAACTGGGCAATTTACATCAGCCTCTGTTGCTGTCCGCCATATTGCTTTTAAAGAGGGCTTTAAAGGATTCTATGCGGGATATGGATCGTTTTTATTGAGAGATTTACCATTTGATGCAATTCAATTTTGCCTATACGAGCAGCTTCGGCTAGGTTACAAAAAAGCAGCAAAAAGAGAGCTCAACGACCCTGAAAATGCTATCATTGGGGCTTTTGCTGGCGCAGTAACTGGAGCAATAACCACTCCGCTTGATGTGATTAAAACCAGGCTAATGGTTCAGGGATCTGCAAACCAGTACAAGGGAATCATTGATTGTGTTCAAACTGTTGTGAGGGAAGAAGGACGTTCTGCTCTTTTGAAGGGCATCGGGCCGAGAGTACTGTGGATAGGCATAGGCGGATCAATCTTTTTTGGAGTCCTTGAGAGGACAAAGCTGCTGCTTGCTCAGAGGAAACCTGCACTCCCTCAAGACTCAAAGCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

285

Amino Acids

30.54

Weight (kDa)

9.69

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	244, 832
AciI	CCGC	4 cut(s)	403, 443, 614, 765
AclWI	GGATC	3 cut(s)	460, 658, 775
AfaI	GTAC	3 cut(s)	64, 665, 747
AfiI	CCNNNNNNNGG	2 cut(s)	159, 667
AgsI	TTSAA	5 cut(s)	83, 256, 491, 689, 727
AjnI	CCWGG	1 cut(s)	632
AluBI	AGCT	4 cut(s)	89, 511, 547, 802
AluI	AGCT	4 cut(s)	89, 511, 547, 802
Alw21I	GWGCWC	2 cut(s)	283, 549
AlwI	GGATC	3 cut(s)	460, 658, 775
AlwNI	CAGNNNCTG	2 cut(s)	392, 596
AoxI	GGCC	1 cut(s)	737
ApeKI	GCWGC	6 cut(s)	128, 320, 508, 533, 802, 805
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	283, 549
BbvI	GCAGC	6 cut(s)	115, 307, 520, 545, 789, 792
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	634
BfaI	CTAG	2 cut(s)	284, 518
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	244, 832
BisI	GCNGC	6 cut(s)	129, 321, 509, 534, 803, 806
BlsI	GCNGC	6 cut(s)	130, 322, 510, 535, 804, 807
BmcAI	AGTACT	1 cut(s)	747
Bme1390I	CCNGG	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	737
BmrFI	CCNGG	1 cut(s)	634
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	4 cut(s)	332, 354, 472, 741
BmuI	ACTGGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	618
BpuEI	CTTGAG	2 cut(s)	809, 819
BsaBI	GATNNNNATC	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 667
Bse118I	RCCGGY	2 cut(s)	68, 202
Bse1I	ACTGG	4 cut(s)	184, 376, 601, 661
Bse3DI	GCAATG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	634
BseGI	GGATG	1 cut(s)	369
BseJI	GATNNNNATC	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	159, 667
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	827
BseNI	ACTGG	4 cut(s)	184, 376, 601, 661
BseXI	GCAGC	6 cut(s)	115, 307, 520, 545, 789, 792
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	739
BsiHKAI	GWGCWC	2 cut(s)	283, 549
BsiSI	CCGG	2 cut(s)	69, 203
BslI	CCNNNNNNNGG	2 cut(s)	159, 667
BsnI	GGCC	1 cut(s)	739
Bsp1286I	GDGCHC	2 cut(s)	283, 549
Bsp143I	GATC	3 cut(s)	452, 650, 767
BspACI	CCGC	4 cut(s)	403, 443, 614, 765
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	1 cut(s)	826
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	2 cut(s)	244, 832
BspPI	GGATC	3 cut(s)	460, 658, 775
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	2 cut(s)	68, 202
BsrI	ACTGG	4 cut(s)	184, 376, 601, 661
BssAI	RCCGGY	2 cut(s)	68, 202
BssMI	GATC	3 cut(s)	452, 650, 767
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	3 cut(s)	252, 694, 750
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	3 cut(s)	126, 586, 810
BstDEI	CTNAG	2 cut(s)	275, 813
BstF5I	GGATG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	455, 653, 770
BstMBI	GATC	3 cut(s)	452, 650, 767
BstMWI	GCNNNNNNNGC	4 cut(s)	364, 373, 395, 514
BstNI	CCWGG	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	6 cut(s)	115, 307, 520, 545, 789, 792
BstX2I	RGATCY	1 cut(s)	650
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	1 cut(s)	739
BtsCI	GGATG	1 cut(s)	369
BveI	ACCTGC	2 cut(s)	244, 832
Cac8I	GCNNGC	3 cut(s)	126, 586, 810
CaiI	CAGNNNCTG	2 cut(s)	392, 596
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	2 cut(s)	68, 202
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	63, 664, 746
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviQI	GTAC	3 cut(s)	63, 664, 746
DdeI	CTNAG	2 cut(s)	275, 813
DpnI	GATC	3 cut(s)	454, 652, 769
DpnII	GATC	3 cut(s)	452, 650, 767
DraI	TTTAAA	2 cut(s)	418, 430
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	392, 780
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco53kI	GAGCTC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	549
FaiI	YATR	8 cut(s)	94, 110, 231, 408, 441, 450, 502, 761
FauI	CCCGC	1 cut(s)	436
Fnu4HI	GCNGC	6 cut(s)	129, 321, 509, 534, 803, 806
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	6 cut(s)	129, 321, 509, 534, 803, 806
FspBI	CTAG	2 cut(s)	284, 518
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	6 cut(s)	129, 321, 509, 534, 803, 806
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	739
HapII	CCGG	2 cut(s)	69, 203
HhaI	GCGC	1 cut(s)	590
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HinfI	GANTC	4 cut(s)	435, 672, 783, 839
HpaII	CCGG	2 cut(s)	69, 203
Hpy188I	TCNGA	2 cut(s)	342, 816
Hpy188III	TCNNGA	2 cut(s)	171, 836
HpyAV	CCTTC	2 cut(s)	701, 721
HpyCH4III	ACNGT	3 cut(s)	252, 694, 750
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	9 cut(s)	4, 56, 124, 212, 323, 367, 485, 656, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	364, 373, 395, 514
HpyF3I	CTNAG	2 cut(s)	275, 813
HpySE526I	ACGT	1 cut(s)	712
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	452, 650, 767
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	6 cut(s)	115, 307, 520, 545, 789, 792
LweI	GCATC	4 cut(s)	332, 354, 472, 741
MaeI	CTAG	2 cut(s)	284, 518
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	2 cut(s)	521, 592
MalI	GATC	3 cut(s)	454, 652, 769
MboI	GATC	3 cut(s)	452, 650, 767
MboII	GAAGA	4 cut(s)	20, 253, 268, 716
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	2 cut(s)	283, 549
MluCI	AATT	4 cut(s)	213, 377, 486, 491
MlyI	GAGTC	2 cut(s)	792, 833
MmeI	TCCRAC	2 cut(s)	202, 365
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	6 cut(s)	156, 354, 417, 429, 627, 853
MspI	CCGG	2 cut(s)	69, 203
MspR9I	CCNGG	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	4 cut(s)	364, 373, 395, 514
NdeII	GATC	3 cut(s)	452, 650, 767
NmeAIII	GCCGAG	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	435, 672
PkrI	GCNGC	6 cut(s)	130, 322, 510, 535, 804, 807
PleI	GAGTC	2 cut(s)	791, 833
PpsI	GAGTC	2 cut(s)	791, 833
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspPI	GGNCC	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	2 cut(s)	392, 596
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	3 cut(s)	64, 665, 747
RsaNI	GTAC	3 cut(s)	63, 664, 746
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	6 cut(s)	156, 354, 417, 429, 627, 853
SatI	GCNGC	6 cut(s)	129, 321, 509, 534, 803, 806
Sau3AI	GATC	3 cut(s)	452, 650, 767
Sau96I	GGNCC	1 cut(s)	737
ScaI	AGTACT	1 cut(s)	747
SchI	GAGTC	2 cut(s)	792, 833
ScrFI	CCNGG	1 cut(s)	634
SduI	GDGCHC	2 cut(s)	283, 549
SfaNI	GCATC	4 cut(s)	332, 354, 472, 741
SfcI	CTRYAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	788, 834
SmoI	CTYRAG	2 cut(s)	788, 834
Sse9I	AATT	4 cut(s)	213, 377, 486, 491
SsiI	CCGC	4 cut(s)	403, 443, 614, 765
SspMI	CTAG	2 cut(s)	284, 518
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	252, 694, 750
TaiI	ACGT	1 cut(s)	715
TasI	AATT	4 cut(s)	213, 377, 486, 491
TatI	WGTACW	2 cut(s)	663, 745
TfiI	GAWTC	2 cut(s)	435, 672
Tru1I	TTAA	6 cut(s)	156, 354, 417, 429, 627, 853
Tru9I	TTAA	6 cut(s)	156, 354, 417, 429, 627, 853
TseI	GCWGC	6 cut(s)	128, 320, 508, 533, 802, 805
TspDTI	ATGAA	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	284, 518
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.