Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

29538139 .. 29539514

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGACGTGGTTGAGAAATTCGGAGAGCTTTGCCGGAGCTTCTTCATCAGATGCATGTGGCAAGAAATTTCAGAATGTTACTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCTTTTGATTTGTTGCGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

82

Amino Acids

8.82

Weight (kDa)

8.93

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	51 - 81	2e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AciI	CCGC	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	16, 65
AfaI	GTAC	2 cut(s)	148, 178
AgsI	TTSAA	1 cut(s)	197
AjiI	CACGTC	1 cut(s)	6
AluBI	AGCT	4 cut(s)	27, 38, 182, 203
AluI	AGCT	4 cut(s)	27, 38, 182, 203
ApoI	RAATTY	2 cut(s)	16, 65
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
BfuAI	ACCTGC	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	40, 113
BsiSI	CCGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	116, 240
BstNSI	RCATGY	2 cut(s)	57, 118
BtrI	CACGTC	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	116, 240
Csp6I	GTAC	2 cut(s)	147, 177
CviAII	CATG	2 cut(s)	54, 115
CviJI	RGCY	5 cut(s)	27, 38, 130, 182, 203
CviKI_1	RGCY	5 cut(s)	27, 38, 130, 182, 203
CviQI	GTAC	2 cut(s)	147, 177
EcoT22I	ATGCAT	1 cut(s)	55
FaeI	CATG	2 cut(s)	57, 118
FaiI	YATR	6 cut(s)	55, 83, 116, 167, 208, 224
FatI	CATG	2 cut(s)	53, 114
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	2 cut(s)	57, 118
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	22, 49, 72
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	4 cut(s)	53, 104, 118, 238
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	57, 118
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	6 cut(s)	46, 104, 156, 168, 224, 228
LweI	GCATC	2 cut(s)	40, 113
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	33
MluCI	AATT	2 cut(s)	16, 65
MnlI	CCTC	2 cut(s)	151, 167
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	33
NlaIII	CATG	2 cut(s)	57, 118
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	2 cut(s)	57, 118
PaeI	GCATGC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	148, 178
RsaNI	GTAC	2 cut(s)	147, 177
SaqAI	TTAA	1 cut(s)	247
SetI	ASST	7 cut(s)	8, 29, 40, 178, 184, 205, 247
SfaNI	GCATC	2 cut(s)	40, 113
SgeI	CNNG	9 cut(s)	18, 45, 66, 73, 127, 131, 183, 195, 243
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	16, 65
SsiI	CCGC	1 cut(s)	91
TaiI	ACGT	1 cut(s)	8
TasI	AATT	2 cut(s)	16, 65
Tru1I	TTAA	1 cut(s)	247
Tru9I	TTAA	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	33
XapI	RAATTY	2 cut(s)	16, 65
XceI	RCATGY	2 cut(s)	57, 118
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.