Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

28261270 .. 28266116

Gene Structure 4847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAATCCCTTATGTGACTGCAGGGGCTTGTGGAGGCATTGCTGCTTCACACATTCGTGTTCCAACGGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACATCCGCCTCTGCTGCTGTTCACCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCTGTTATAAAGTGGCGCCTTGATGCACGAACTGGTGACCATGGGGTTGATGCTTCTGCAGCACCATTGTGCTTAACCATGTTCGTAATGGATGATAGGATATGTAGGCAAAGAGAGAGCTCAACTGAGAATGCTATAATTGGAGAGTTTGCAGGTGCTTTAACTGGAGCTATAACCACTCCCCTTGATGTGATTAAAACTAGAGTAATGGTACAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCCCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCGGTGCAACCTTTTTTGGTGTTCTCGAGAGAACAAAGCGCTTGCTCAGAGACGACCAACAGTTGGTGAAGACACGAAGCAGGACTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

197

Amino Acids

21.14

Weight (kDa)

9.35

Isoelectric Point (pI)

23.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 56	3.5e-07	Mitochondrial carrier protein
Mito_carr	PF00153	94 - 184	4.3e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AarI	CACCTGC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	559
AciI	CCGC	3 cut(s)	111, 450, 498
AclWI	GGATC	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	2 cut(s)	378, 398
AfeI	AGCGCT	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	460, 559
AgsI	TTSAA	2 cut(s)	154, 460
AleI	CACNNNNGTG	2 cut(s)	57, 232
AluBI	AGCT	2 cut(s)	285, 335
AluI	AGCT	2 cut(s)	285, 335
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	1 cut(s)	521
Aor51HI	AGCGCT	1 cut(s)	536
ApeKI	GCWGC	4 cut(s)	44, 119, 137, 224
AspLEI	GCGC	2 cut(s)	183, 537
AspS9I	GGNCC	2 cut(s)	443, 470
AsuHPI	GGTGA	3 cut(s)	119, 212, 574
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	443, 470
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	31, 106, 124, 236
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	21, 222
BfoI	RGCGCY	2 cut(s)	184, 538
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	4 cut(s)	45, 120, 138, 225
BlsI	GCNGC	4 cut(s)	46, 121, 139, 226
Bme18I	GGWCC	2 cut(s)	443, 470
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	443, 470
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	3 cut(s)	78, 178, 205
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	460, 559
Bse1I	ACTGG	3 cut(s)	202, 334, 394
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	3 cut(s)	93, 107, 262
BseLI	CCNNNNNNNGG	2 cut(s)	460, 559
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	282, 556
BseNI	ACTGG	3 cut(s)	202, 334, 394
BseXI	GCAGC	4 cut(s)	31, 106, 124, 236
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	460, 559
BsmAI	GTCTC	1 cut(s)	540
BsmBI	CGTCTC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	383
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	3 cut(s)	111, 450, 498
BspCNI	CTCAG	2 cut(s)	283, 555
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	2 cut(s)	25, 226
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	202, 334, 394
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	383
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	416, 558
BstACI	GRCGYC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	3 cut(s)	141, 291, 542
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	3 cut(s)	93, 107, 262
BstH2I	RGCGCY	2 cut(s)	184, 538
BstHHI	GCGC	2 cut(s)	183, 537
BstKTI	GATC	1 cut(s)	386
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 97, 119, 224
BstPI	GGTNACC	1 cut(s)	200
BstSFI	CTRYAG	2 cut(s)	21, 222
BstV1I	GCAGC	4 cut(s)	31, 106, 124, 236
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	93, 107, 262
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	539
CfoI	GCGC	2 cut(s)	183, 537
Cfr13I	GGNCC	2 cut(s)	443, 470
Csp6I	GTAC	2 cut(s)	377, 397
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	206, 244
CviJI	RGCY	4 cut(s)	29, 150, 285, 335
CviKI_1	RGCY	4 cut(s)	29, 150, 285, 335
CviQI	GTAC	2 cut(s)	377, 397
DdeI	CTNAG	3 cut(s)	141, 291, 542
DinI	GGCGCC	1 cut(s)	182
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	443, 470
Eco47III	AGCGCT	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	2 cut(s)	209, 247
FaiI	YATR	8 cut(s)	15, 165, 173, 207, 245, 268, 302, 338
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	2 cut(s)	205, 243
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	45, 120, 138, 225
FokI	GGATG	3 cut(s)	94, 100, 269
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	45, 120, 138, 225
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	2 cut(s)	182, 536
GluI	GCNGC	4 cut(s)	45, 120, 138, 225
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	2 cut(s)	184, 538
HhaI	GCGC	2 cut(s)	183, 537
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	209, 247
Hin6I	GCGC	2 cut(s)	181, 535
HinP1I	GCGC	2 cut(s)	181, 535
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	159
HphI	GGTGA	3 cut(s)	119, 212, 574
Hpy166II	GTNNAC	2 cut(s)	127, 412
Hpy188I	TCNGA	2 cut(s)	423, 545
Hpy188III	TCNNGA	2 cut(s)	521, 523
Hpy8I	GTNNAC	2 cut(s)	127, 412
HpyAV	CCTTC	2 cut(s)	434, 454
HpyCH4III	ACNGT	2 cut(s)	416, 558
HpyCH4V	TGCA	6 cut(s)	23, 91, 191, 224, 317, 503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 97, 119, 224
HpyF3I	CTNAG	3 cut(s)	141, 291, 542
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	209, 247
HspAI	GCGC	2 cut(s)	181, 535
KasI	GGCGCC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	7 cut(s)	9, 183, 303, 315, 365, 407, 562
Lsp1109I	GCAGC	4 cut(s)	31, 106, 124, 236
LweI	GCATC	3 cut(s)	78, 178, 205
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	16, 200
MalI	GATC	1 cut(s)	385
MboI	GATC	1 cut(s)	383
MboII	GAAGA	2 cut(s)	449, 577
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	3 cut(s)	101, 303, 405
Mly113I	GGCGCC	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	6 cut(s)	29, 64, 124, 139, 426, 456
MseI	TTAA	3 cut(s)	239, 326, 360
MslI	CAYNNNNRTG	2 cut(s)	57, 232
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	88, 97, 119, 224
NarI	GGCGCC	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	383
NlaIII	CATG	2 cut(s)	209, 247
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	16, 200
OliI	CACNNNNGTG	2 cut(s)	57, 232
PaeR7I	CTCGAG	1 cut(s)	521
PaqCI	CACCTGC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	4 cut(s)	46, 121, 139, 226
PleI	GAGTC	1 cut(s)	153
PluTI	GGCGCC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	153
PpuMI	RGGWCCY	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	443
PspEI	GGTNACC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	443, 470
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	2 cut(s)	25, 226
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	2 cut(s)	378, 398
RsaNI	GTAC	2 cut(s)	377, 397
RseI	CAYNNNNRTG	2 cut(s)	57, 232
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	239, 326, 360
SatI	GCNGC	4 cut(s)	45, 120, 138, 225
Sau3AI	GATC	1 cut(s)	383
Sau96I	GGNCC	2 cut(s)	443, 470
SchI	GAGTC	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	75, 132, 287, 322, 337, 448, 509
SfaNI	GCATC	3 cut(s)	78, 178, 205
SfcI	CTRYAG	2 cut(s)	21, 222
SfoI	GGCGCC	1 cut(s)	182
Sfr274I	CTCGAG	1 cut(s)	521
SinI	GGWCC	2 cut(s)	443, 470
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	57, 232
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	101, 303, 405
SsiI	CCGC	3 cut(s)	111, 450, 498
SspDI	GGCGCC	1 cut(s)	180
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	416, 558
TaqI	TCGA	1 cut(s)	522
TasI	AATT	3 cut(s)	101, 303, 405
TatI	WGTACW	1 cut(s)	396
Tru1I	TTAA	3 cut(s)	239, 326, 360
Tru9I	TTAA	3 cut(s)	239, 326, 360
TseFI	GTSAC	2 cut(s)	16, 200
TseI	GCWGC	4 cut(s)	44, 119, 137, 224
Tsp45I	GTSAC	2 cut(s)	16, 200
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	559
VpaK11BI	GGWCC	2 cut(s)	443, 470
XagI	CCTNNNNNAGG	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	2 cut(s)	250, 480
XhoI	CTCGAG	1 cut(s)	521
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.