Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Reverse (-)

29149472 .. 29156534

Gene Structure 7063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTCCTCTTACTCTGGCCGTCAATTTGGAAAGCTTTACTTATGCATGTGGCAAGAAATTTCAGAATGTTACTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCTTTTGATTTGTTGCATACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGATAAGATTGCAGACACAGTTATCTCTTAATCCTCTGTCTCTTCAATCTCTCTCTCTCTCTGTGTTTTTTTTTTTAGACAGAAAAAGCTACAATGGCACAGGAAATCAGGCTTCCGCAGTTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGAGCTTGTGGAGGCATTGCTGCTTCATCATTCGTTGTAAAGCAAAGGATGCAAACAGGGCAATTCACATCCGCCTCTGCTGCTGTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGATGGGAGGGATATGGATTATTTTTATTGCGAGATTGGCCATTTGATGCCATTCAATTTTGTCTATATGAGCAGCTTCGGATAGGTTATAAAGCAAAGAGAGAGTTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTAGTGGACCAAGAGTACTGTGGATAGGGATTGGCGGTTCAATTTTTTGGGTGTTTTTGAGAGAACAAAGCGCTTACTTGCTCAGGGACGACCAACAGTTGGTGAAGACACGAAGCAGGACTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

295

Amino Acids

32.57

Weight (kDa)

9.33

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	49 - 82	4.5e-07	Mitochondrial carrier protein
Mito_carr	PF00153	232 - 277	5.4e-06	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccBSI	CCGCTC	1 cut(s)	746
AciI	CCGC	6 cut(s)	85, 336, 425, 498, 744, 792
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	2 cut(s)	18, 590
AcsI	RAATTY	1 cut(s)	59
AfaI	GTAC	2 cut(s)	172, 774
AfeI	AGCGCT	2 cut(s)	406, 829
AfiI	CCNNNNNNNGG	1 cut(s)	856
AgsI	TTSAA	7 cut(s)	191, 266, 540, 608, 661, 754, 798
AloI	GAACNNNNNNTCC	2 cut(s)	778, 810
AluBI	AGCT	8 cut(s)	36, 176, 197, 309, 413, 431, 628, 689
AluI	AGCT	8 cut(s)	36, 176, 197, 309, 413, 431, 628, 689
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	659
Aor51HI	AGCGCT	2 cut(s)	406, 829
AoxI	GGCC	2 cut(s)	18, 590
ApeKI	GCWGC	4 cut(s)	446, 506, 523, 625
ApoI	RAATTY	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	2 cut(s)	407, 830
AspS9I	GGNCC	3 cut(s)	5, 737, 764
AsuHPI	GGTGA	1 cut(s)	871
AvaII	GGWCC	3 cut(s)	5, 737, 764
BalI	TGGCCA	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	869
BbvI	GCAGC	4 cut(s)	433, 493, 510, 637
BccI	CCATC	1 cut(s)	549
BceAI	ACGGC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	264
BfoI	RGCGCY	2 cut(s)	408, 831
BisI	GCNGC	4 cut(s)	447, 507, 524, 626
BlsI	GCNGC	4 cut(s)	448, 508, 525, 627
BmcAI	AGTACT	1 cut(s)	774
Bme18I	GGWCC	3 cut(s)	5, 737, 764
BmgT120I	GGNCC	3 cut(s)	5, 737, 764
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	107, 465, 589
BpiI	GAAGAC	1 cut(s)	869
Bpu10I	CCTNAGC	2 cut(s)	527, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	856
Bse3DI	GCAATG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	480, 494
BseLI	CCNNNNNNNGG	1 cut(s)	856
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	660, 853
BseXI	GCAGC	4 cut(s)	433, 493, 510, 637
BshFI	GGCC	2 cut(s)	20, 592
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	1 cut(s)	856
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	857
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	20, 592
Bsp143I	GATC	1 cut(s)	664
BspACI	CCGC	6 cut(s)	85, 336, 425, 498, 744, 792
BspANI	GGCC	2 cut(s)	20, 592
BspCNI	CTCAG	2 cut(s)	661, 852
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	441
BssMI	GATC	1 cut(s)	664
Bst4CI	ACNGT	4 cut(s)	240, 710, 777, 855
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	4 cut(s)	401, 527, 669, 839
BstF5I	GGATG	2 cut(s)	480, 494
BstH2I	RGCGCY	2 cut(s)	408, 831
BstHHI	GCGC	2 cut(s)	407, 830
BstKTI	GATC	1 cut(s)	667
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	6 cut(s)	315, 475, 484, 506, 512, 589
BstNSI	RCATGY	2 cut(s)	51, 112
BstV1I	GCAGC	4 cut(s)	433, 493, 510, 637
BstV2I	GAAGAC	1 cut(s)	869
BsuRI	GGCC	2 cut(s)	20, 592
BtgZI	GCGATG	1 cut(s)	568
BtsCI	GGATG	2 cut(s)	480, 494
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	2 cut(s)	407, 830
Cfr13I	GGNCC	3 cut(s)	5, 737, 764
Csp6I	GTAC	2 cut(s)	171, 773
CviAII	CATG	2 cut(s)	48, 109
CviQI	GTAC	2 cut(s)	171, 773
DdeI	CTNAG	4 cut(s)	401, 527, 669, 839
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
EaeI	YGGCCR	2 cut(s)	18, 590
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	487
Eco47I	GGWCC	3 cut(s)	5, 737, 764
Eco47III	AGCGCT	2 cut(s)	406, 829
EcoO109I	RGGNCCY	2 cut(s)	5, 737
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	2 cut(s)	51, 112
FalI	AAGNNNNNCTT	4 cut(s)	25, 57, 520, 552
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	2 cut(s)	47, 108
FauI	CCCGC	2 cut(s)	418, 751
Fnu4HI	GCNGC	4 cut(s)	447, 507, 524, 626
FokI	GGATG	2 cut(s)	481, 487
Fsp4HI	GCNGC	4 cut(s)	447, 507, 524, 626
GlaI	GCGC	2 cut(s)	406, 829
GluI	GCNGC	4 cut(s)	447, 507, 524, 626
HaeII	RGCGCY	2 cut(s)	408, 831
HaeIII	GGCC	2 cut(s)	20, 592
HhaI	GCGC	2 cut(s)	407, 830
Hin1II	CATG	2 cut(s)	51, 112
Hin6I	GCGC	2 cut(s)	405, 828
HinP1I	GCGC	2 cut(s)	405, 828
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	545
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	2 cut(s)	706, 764
Hpy188I	TCNGA	3 cut(s)	66, 633, 717
Hpy188III	TCNNGA	2 cut(s)	392, 668
Hpy8I	GTNNAC	2 cut(s)	706, 764
HpyAV	CCTTC	2 cut(s)	728, 748
HpyCH4III	ACNGT	4 cut(s)	240, 710, 777, 855
HpyCH4V	TGCA	7 cut(s)	47, 98, 112, 139, 232, 478, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	315, 475, 484, 506, 512, 589
HpyF3I	CTNAG	4 cut(s)	401, 527, 669, 839
Hsp92II	CATG	2 cut(s)	51, 112
HspAI	GCGC	2 cut(s)	405, 828
Kzo9I	GATC	1 cut(s)	664
LmnI	GCTCC	2 cut(s)	428, 686
Lsp1109I	GCAGC	4 cut(s)	433, 493, 510, 637
LweI	GCATC	3 cut(s)	107, 465, 589
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	666
MbiI	CCGCTC	1 cut(s)	746
MboI	GATC	1 cut(s)	664
MboII	GAAGA	3 cut(s)	254, 743, 874
MlsI	TGGCCA	1 cut(s)	592
MluCI	AATT	8 cut(s)	25, 59, 374, 488, 608, 681, 699, 798
MluNI	TGGCCA	1 cut(s)	592
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	592
Mph1103I	ATGCAT	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	592
MseI	TTAA	2 cut(s)	249, 380
Msp20I	TGGCCA	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	679
MwoI	GCNNNNNNNGC	6 cut(s)	315, 475, 484, 506, 512, 589
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	2 cut(s)	51, 112
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	2 cut(s)	51, 112
PaeI	GCATGC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	856
PkrI	GCNGC	4 cut(s)	448, 508, 525, 627
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PpuMI	RGGWCCY	2 cut(s)	5, 737
PsiI	TTATAA	1 cut(s)	642
Psp5II	RGGWCCY	2 cut(s)	5, 737
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	5, 737, 764
PspPPI	RGGWCCY	2 cut(s)	5, 737
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	172, 774
RsaNI	GTAC	2 cut(s)	171, 773
SaqAI	TTAA	2 cut(s)	249, 380
SatI	GCNGC	4 cut(s)	447, 507, 524, 626
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	3 cut(s)	5, 737, 764
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	1 cut(s)	539
SfaNI	GCATC	3 cut(s)	107, 465, 589
SinI	GGWCC	3 cut(s)	5, 737, 764
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	8 cut(s)	25, 59, 374, 488, 608, 681, 699, 798
SsiI	CCGC	6 cut(s)	85, 336, 425, 498, 744, 792
TaaI	ACNGT	4 cut(s)	240, 710, 777, 855
TasI	AATT	8 cut(s)	25, 59, 374, 488, 608, 681, 699, 798
TatI	WGTACW	1 cut(s)	772
Tru1I	TTAA	2 cut(s)	249, 380
Tru9I	TTAA	2 cut(s)	249, 380
TseI	GCWGC	4 cut(s)	446, 506, 523, 625
TspDTI	ATGAA	2 cut(s)	372, 441
Van91I	CCANNNNNTGG	1 cut(s)	856
VpaK11BI	GGWCC	3 cut(s)	5, 737, 764
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	2 cut(s)	51, 112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
ZrmI	AGTACT	1 cut(s)	774
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.