Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

30685693 .. 30693262

Gene Structure 7570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG280900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTCCTCTTACTCTGGCAGTCAATTCGGAGAGCTTTGCCGGAGCTTCGTCATCAGATGCATGTAGCAAGAAATTTCAGAATGTTCCTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCATTTGATTTCTTACGTACTTTATTTGAGGGTGTTATAGCAGGAGGTACAGCTGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGACTGCAGGCTGCTCGTGGTGGAGGGAAAATAGTCTTGAAGGGACTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTATTACCGGCTTCTGCAATTTTTGTTGGAGTTTATGAACCTACAAAGCAGAAATTGTTAAAGATGTTTCCTGAAAATCTAAGCGCTTTAGCTCATTTTACTGCGGGGGCTTGTGGAGGCATTGCGGCTTCGCTCATTCGTGTTCCAACAGAGGTTGTAAAGCAAAGGATGCAAACGGGGCAATTCACTTCCGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGCTATAACCACTCCCCTTGATGTGATTAAAACCAGACTAATGGTACAGGGATCTGCCAACCAGTACAAAGGAATTGTTGACTGTGTTCAGACTATTGTGAGGGAAGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCGGTTCAATCTTTTTTGGTGTTCTCGAGAGAACAAAGCGCTTACTTGCTCAGAGACGACCAACAGTTGGTGAAGACACGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

295

Amino Acids

31.07

Weight (kDa)

9.71

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	54 - 127	1.2e-11	Mitochondrial carrier protein
Mito_carr	PF00153	132 - 189	1.1e-09	Mitochondrial carrier protein
Mito_carr	PF00153	197 - 283	9.7e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	752
AciI	CCGC	7 cut(s)	100, 422, 443, 510, 566, 750, 798
AclWI	GGATC	2 cut(s)	581, 691
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	4 cut(s)	157, 187, 678, 698
AfeI	AGCGCT	2 cut(s)	403, 836
AfiI	CCNNNNNNNGG	1 cut(s)	863
AgsI	TTSAA	5 cut(s)	206, 280, 553, 760, 804
AloI	GAACNNNNNNTCC	2 cut(s)	784, 816
AluBI	AGCT	8 cut(s)	36, 47, 191, 212, 410, 580, 611, 635
AluI	AGCT	8 cut(s)	36, 47, 191, 212, 410, 580, 611, 635
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	844
AlwI	GGATC	2 cut(s)	581, 691
Ama87I	CYCGRG	1 cut(s)	821
Aor51HI	AGCGCT	2 cut(s)	403, 836
ApeKI	GCWGC	3 cut(s)	251, 518, 536
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	2 cut(s)	404, 837
AspS9I	GGNCC	3 cut(s)	5, 743, 770
AsuHPI	GGTGA	1 cut(s)	878
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	3 cut(s)	5, 743, 770
BanII	GRGCYC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	238, 505, 523
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 236, 270
BcoDI	GTCTC	1 cut(s)	844
BfmI	CTRYAG	1 cut(s)	245
BfoI	RGCGCY	2 cut(s)	405, 838
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	252, 444, 519, 537, 567
BlsI	GCNGC	5 cut(s)	253, 445, 520, 538, 568
Bme18I	GGWCC	3 cut(s)	5, 743, 770
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	3 cut(s)	5, 743, 770
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	49, 122, 477
BpiI	GAAGAC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	634, 694
Bse3DI	GCAATG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	582, 860
BseNI	ACTGG	2 cut(s)	634, 694
BseXI	GCAGC	3 cut(s)	238, 505, 523
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	2 cut(s)	42, 326
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	1 cut(s)	844
BsmBI	CGTCTC	1 cut(s)	844
BsmFI	GGGAC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	601
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	586, 683
BspACI	CCGC	7 cut(s)	100, 422, 443, 510, 566, 750, 798
BspCNI	CTCAG	2 cut(s)	583, 859
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	581, 691
BsrBI	CCGCTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	634, 694
BssAI	RCCGGY	1 cut(s)	325
BssMI	GATC	2 cut(s)	586, 683
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	716, 862
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	125, 249
BstDEI	CTNAG	4 cut(s)	398, 540, 591, 846
BstF5I	GGATG	1 cut(s)	492
BstH2I	RGCGCY	2 cut(s)	405, 838
BstHHI	GCGC	2 cut(s)	404, 837
BstKTI	GATC	2 cut(s)	589, 686
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	2 cut(s)	586, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 496, 518
BstNSI	RCATGY	2 cut(s)	66, 127
BstSFI	CTRYAG	1 cut(s)	245
BstSNI	TACGTA	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	238, 505, 523
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	1 cut(s)	683
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	683
BtsCI	GGATG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	2 cut(s)	125, 249
CfoI	GCGC	2 cut(s)	404, 837
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	5, 743, 770
Csp6I	GTAC	4 cut(s)	156, 186, 677, 697
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	2 cut(s)	63, 124
CviQI	GTAC	4 cut(s)	156, 186, 677, 697
DdeI	CTNAG	4 cut(s)	398, 540, 591, 846
DpnI	GATC	2 cut(s)	588, 685
DpnII	GATC	2 cut(s)	586, 683
EciI	GGCGGA	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	580
Eco105I	TACGTA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	582
Eco47I	GGWCC	3 cut(s)	5, 743, 770
Eco47III	AGCGCT	2 cut(s)	403, 836
Eco53kI	GAGCTC	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	821
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	2 cut(s)	5, 743
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	844
FaeI	CATG	2 cut(s)	66, 127
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	62, 123
FauI	CCCGC	2 cut(s)	415, 757
Fnu4HI	GCNGC	5 cut(s)	252, 444, 519, 537, 567
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	5 cut(s)	252, 444, 519, 537, 567
GlaI	GCGC	2 cut(s)	403, 836
GluI	GCNGC	5 cut(s)	252, 444, 519, 537, 567
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	2 cut(s)	405, 838
HapII	CCGG	2 cut(s)	42, 326
HhaI	GCGC	2 cut(s)	404, 837
Hin1II	CATG	2 cut(s)	66, 127
Hin6I	GCGC	2 cut(s)	402, 835
HinP1I	GCGC	2 cut(s)	402, 835
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	1 cut(s)	558
HpaII	CCGG	2 cut(s)	42, 326
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	5 cut(s)	31, 58, 81, 723, 849
Hpy188III	TCNNGA	6 cut(s)	277, 294, 389, 590, 821, 823
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	3 cut(s)	274, 734, 754
HpyCH4III	ACNGT	2 cut(s)	716, 862
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	8 cut(s)	62, 113, 127, 247, 335, 490, 617, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 496, 518
HpyF3I	CTNAG	4 cut(s)	398, 540, 591, 846
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	66, 127
HspAI	GCGC	2 cut(s)	402, 835
Kzo9I	GATC	2 cut(s)	586, 683
LmnI	GCTCC	3 cut(s)	44, 608, 632
Lsp1109I	GCAGC	3 cut(s)	238, 505, 523
LweI	GCATC	3 cut(s)	49, 122, 477
MaeII	ACGT	1 cut(s)	154
MalI	GATC	2 cut(s)	588, 685
MbiI	CCGCTC	1 cut(s)	752
MboI	GATC	2 cut(s)	586, 683
MboII	GAAGA	2 cut(s)	749, 881
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	7 cut(s)	25, 74, 336, 371, 500, 603, 705
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	2 cut(s)	325, 488
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	3 cut(s)	377, 626, 660
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	42, 326
Mva1269I	GAATGC	1 cut(s)	601
MwoI	GCNNNNNNNGC	3 cut(s)	487, 496, 518
NdeII	GATC	2 cut(s)	586, 683
NlaIII	CATG	2 cut(s)	66, 127
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	66, 127
PaeI	GCATGC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	821
PaqCI	CACCTGC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	5 cut(s)	253, 445, 520, 538, 568
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	2 cut(s)	5, 743
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	2 cut(s)	5, 743
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	5, 743, 770
PspPPI	RGGWCCY	2 cut(s)	5, 743
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	4 cut(s)	157, 187, 678, 698
RsaNI	GTAC	4 cut(s)	156, 186, 677, 697
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	377, 626, 660
SatI	GCNGC	5 cut(s)	252, 444, 519, 537, 567
Sau3AI	GATC	2 cut(s)	586, 683
Sau96I	GGNCC	3 cut(s)	5, 743, 770
SchI	GAGTC	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	3 cut(s)	49, 122, 477
SfcI	CTRYAG	1 cut(s)	245
Sfr274I	CTCGAG	1 cut(s)	821
SinI	GGWCC	3 cut(s)	5, 743, 770
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SnaBI	TACGTA	1 cut(s)	155
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	7 cut(s)	25, 74, 336, 371, 500, 603, 705
SsiI	CCGC	7 cut(s)	100, 422, 443, 510, 566, 750, 798
SstI	GAGCTC	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	716, 862
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	822
TasI	AATT	7 cut(s)	25, 74, 336, 371, 500, 603, 705
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	2 cut(s)	446, 569
Tru1I	TTAA	3 cut(s)	377, 626, 660
Tru9I	TTAA	3 cut(s)	377, 626, 660
TseI	GCWGC	3 cut(s)	251, 518, 536
TspDTI	ATGAA	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	3 cut(s)	5, 743, 770
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	2 cut(s)	66, 127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	780
XhoI	CTCGAG	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.