Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

19675524 .. 19679012

Gene Structure 3489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0209400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGTCTCCTAATAACTGGAGATCATCCCTCTTCCTCCTCCACTTCGTCATATCATCATCATCATCATCAAATCCACACCCTCAGTTCCCATGCAACCAACCCCACCATAACTCCCTGTACCCTTTTTGCAACACCTCCCTCTCCACCACCACCAGAGCCCAGTCCCTAATTTCCCTCCTCACCCTCAATGAGAAAATCCAACAGCTCTCCAACACTGCCTCTGGAATCCCCAGACTTGGAATCCCACCCTATGAGTGGTGGTCTGAGTCACTCCATGGAATTGCCACAAATGGCCCTGGTGTCTCCTTCAATGGCACCATCCCTTCAGCCACAAGCTTCCCACAAGTGATTGTGACTGCATCTGCTTTCAATAGGACTCTGTGGAACTTGATTGGCTCTGCCATTGCTGTTGAGGCTAGAGCTATGTACAACTTTGGCCAAGCTGGGTTGACATTTTGGGCACCCAATATTAATATCTTTAGGGACCCAAGATGGGGGAGAGGCCAAGAGACCCCTGGGGAGGACCCCATGGTTGCTTCTGCTTATGCTGTTGAGTTTGTGAAGGGATTTCAAGGTGGGAATTGGGGAGGTGGGAGTGGTATTGGAAATGGGTTTGGAGGGAAAAGAGTGTTGGAAGAGAGTGATGGGTTAATGCTTTCAGCTTGTTGCAAGCATTTCACTGCTTATGATTTGGAGATGTGGGGCAAGTATAGTAGATATAGCTTCAATGCAGTGGTTTCAGAACAAGATTTGGAGGACACATATCAGCCGCCTTTTCGTAGCTGCATACAGCAAGGCAAAGCGAGCTGCTTGATGTGTTCTTACAATGCAGTAAATGGGGTTCCAGCATGTGCAGACAAGGATTTGTTGGAGAAAGCTCGAGACAAATGGCACTTCAAAGGGTATATCACCTCAGACTGTGATGCTGTGGCCACAGTTTTTGAATATCAGAATTATACAAAAACTGCTGAGGATGCAGTTGCTGATGTTCTTAAAGCAGGAACGGATATTGATTGTGGTACATACTTGGTTCGAAATACTCTTTCTACAATCAAACAAGGAAAGGTGCAAGAGGAAGACATAGATAGGGCTCTTCTTAATCTTTTCTCCGTTCAACTCCGTCTTGGGCTGTTTGATGGAGATCCCATAAAAGGGCAATTCGGAAGGTTGGGACCTCAAGACGTGTGTACATCAGAGCACAAAAATTTGGCACTCGAAGCAGCAAGGCAGGGAATTGTGCTTCTTAAAAATGATAAGAAGTTCCTGCCCCTGAAAAAGGGTGTTGATTTTTCGTTGGCTGTTATTGGTCCATTGGCGAACAATGCAAGTTTGCTGGGTGGGGGTTACACAGGGATTCCTTGCAACCCAAAGACTCCTTTTGAGGGTCTTCAGGAGTACAGAAAAAGAACATCTTACACAACTGGTTGCCTTGATGTACCATGTGTTTCTGATTCTGGGTTCAAGGAAGCAATTCGTGCTGCCAAAAAAGCCGATTTTTCTGTTATAGTTGTTGGTCTTGATGCGTCACAAGAAAGAGAAGATCACGACCGAGTTAGTCTTCTCCTACCTGGTAAGCAGATGGCCCTTGTATCTTCAGTAGCTGCTGCAAGTAAAAACCCAGTGATTCTAGTTCTTGCTGGTGGTGGACCACTTGACGTATCATTCGCCGAAAAAGACCCGCGAATTGCTAGCATTCTTTGGATTGGGTACCCTGGTGAAACTGGTGGGAGGGCGCTATCAGAAATCATCTTTGGAGACGTTAATCCAAGTGGAAGGCTGCCAATGACTTGGTATTTTGAGTCATTCACCAACATCCCAATGAATGATATGAATATGAGAGCTGATCCTTCTCGCGGTTATCCAGGAAGAACCTACCGGTTTTACACAGGGAATAGGGTGTATGGATTTGGACATGGCTTGAGCTACACAAATTTCACTTACAATATCGTGTCAGCACCAACCAAATTAAGCATACCAACACCTTTCAAGGTTGATTCAATCAAAAACATACTACACCAAGCAGGAGATATAGTTGATTATTTACGCATAGATGAAGTGACATCTTGTGACTCCTTGAGATTTTCTGTCGAAATCAATGTGATGAATGTAGGAGACATGGATGGAAGCCATACTGTGATATTGTACTCTCGAGTGCCAGAAATTATGAAAGGTGCTCCAAAACAACAGCTGGTTGGATTTAATCAAGTGCATACTGTCTCATATAAATCTACATCAACAAGCATTTTGGTAGATCCTTGTACTCATCTTAGCTTTGCAAATGATTACGGCGAAAGGATACTGGCATTGGGTGATCATATGTTATTGGTTGGAGATGTAAAGCATTTTGTTTCAGTTGAAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

788

Amino Acids

86.15

Weight (kDa)

6.18

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	108 - 366	2.3e-31	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	412 - 642	2.5e-49	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1707
AccB1I	GGYRCC	3 cut(s)	314, 460, 1707
AccII	CGCG	2 cut(s)	1681, 1854
AciI	CCGC	3 cut(s)	770, 1679, 1854
AclWI	GGATC	3 cut(s)	1136, 1838, 2246
AcoI	YGGCCR	2 cut(s)	436, 930
AcsI	RAATTY	2 cut(s)	1204, 1930
AcuI	CTGAAG	3 cut(s)	309, 1373, 1578
AfaI	GTAC	9 cut(s)	119, 428, 1021, 1189, 1397, 1437, 1709, 2144, 2260
AflIII	ACRYGT	1 cut(s)	1182
AgeI	ACCGGT	1 cut(s)	1875
AjiI	CACGTC	1 cut(s)	1183
AjnI	CCWGG	5 cut(s)	295, 514, 1567, 1711, 1861
AjuI	GAANNNNNNNTTGG	4 cut(s)	614, 646, 1734, 1766
Alw21I	GWGCWC	2 cut(s)	1200, 2176
Alw26I	GTCTC	7 cut(s)	9, 307, 503, 876, 1749, 2106, 2221
AlwI	GGATC	3 cut(s)	1136, 1838, 2246
AlwNI	CAGNNNCTG	2 cut(s)	983, 1601
Ama87I	CYCGRG	2 cut(s)	879, 2148
AoxI	GGCC	5 cut(s)	292, 436, 502, 930, 1581
ApeKI	GCWGC	7 cut(s)	783, 807, 1220, 1478, 1601, 1604, 1777
ApoI	RAATTY	2 cut(s)	1204, 1930
ArsI	GACNNNNNNTTYG	2 cut(s)	1646, 1678
AseI	ATTAAT	1 cut(s)	471
AsiGI	ACCGGT	1 cut(s)	1875
Asp700I	GAANNNNTTC	1 cut(s)	1470
Asp718I	GGTACC	1 cut(s)	1707
AspLEI	GCGC	1 cut(s)	1735
AspS9I	GGNCC	7 cut(s)	293, 484, 523, 1172, 1307, 1582, 1646
AsuHPI	GGTGA	5 cut(s)	172, 901, 1727, 1798, 2321
AsuII	TTCGAA	1 cut(s)	1033
AsuNHI	GCTAGC	1 cut(s)	1688
AvaI	CYCGRG	2 cut(s)	879, 2148
AvaII	GGWCC	5 cut(s)	484, 523, 1172, 1307, 1646
BaeGI	GKGCMC	1 cut(s)	463
BaeI	ACNNNNGTAYC	2 cut(s)	1699, 1732
BalI	TGGCCA	2 cut(s)	438, 932
BanI	GGYRCC	3 cut(s)	314, 460, 1707
BanII	GRGCYC	2 cut(s)	160, 1093
BbsI	GAAGAC	3 cut(s)	1083, 1379, 1550
Bbv12I	GWGCWC	2 cut(s)	1200, 2176
BbvCI	CCTCAGC	1 cut(s)	969
BbvI	GCAGC	7 cut(s)	770, 794, 1232, 1465, 1588, 1591, 1764
BccI	CCATC	6 cut(s)	326, 486, 638, 1130, 1573, 2114
BceAI	ACGGC	1 cut(s)	2302
BciT130I	CCWGG	5 cut(s)	297, 516, 1569, 1713, 1863
BciVI	GTATCC	1 cut(s)	2289
BclI	TGATCA	1 cut(s)	2311
BcoDI	GTCTC	7 cut(s)	9, 307, 503, 876, 1749, 2106, 2221
BfaI	CTAG	3 cut(s)	417, 1628, 1689
BfoI	RGCGCY	1 cut(s)	1736
BfuI	GTATCC	1 cut(s)	2289
BisI	GCNGC	8 cut(s)	770, 784, 808, 1221, 1479, 1602, 1605, 1778
BlsI	GCNGC	8 cut(s)	771, 785, 809, 1222, 1480, 1603, 1606, 1779
Bme1390I	CCNGG	5 cut(s)	297, 516, 1569, 1713, 1863
Bme18I	GGWCC	5 cut(s)	484, 523, 1172, 1307, 1646
BmeT110I	CYCGRG	2 cut(s)	879, 2148
BmgBI	CACGTC	1 cut(s)	1183
BmgT120I	GGNCC	7 cut(s)	293, 484, 523, 1172, 1307, 1582, 1646
BmiI	GGNNCC	8 cut(s)	316, 462, 485, 486, 525, 843, 1173, 1709
BmrFI	CCNGG	5 cut(s)	297, 516, 1569, 1713, 1863
BmrI	ACTGGG	2 cut(s)	154, 1613
BmsI	GCATC	4 cut(s)	368, 913, 964, 1510
BmtI	GCTAGC	1 cut(s)	1692
BmuI	ACTGGG	2 cut(s)	154, 1613
BpiI	GAAGAC	3 cut(s)	1083, 1379, 1550
BpmI	CTGGAG	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	1033
BpuEI	CTTGAG	3 cut(s)	1161, 1939, 2095
BsaBI	GATNNNNATC	1 cut(s)	1140
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	6 cut(s)	274, 295, 514, 515, 528, 1711
BsaWI	WCCGGW	1 cut(s)	1875
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 2016, 2046
Bse118I	RCCGGY	1 cut(s)	1875
Bse1I	ACTGG	6 cut(s)	20, 160, 1426, 1619, 1726, 2304
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	1140
BseBI	CCWGG	5 cut(s)	297, 516, 1569, 1713, 1863
BseDI	CCNNGG	6 cut(s)	274, 295, 514, 515, 528, 1711
BseGI	GGATG	5 cut(s)	23, 318, 979, 1812, 2125
BseJI	GATNNNNATC	1 cut(s)	1140
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	4 cut(s)	95, 255, 927, 960
BseNI	ACTGG	6 cut(s)	20, 160, 1426, 1619, 1726, 2304
BseRI	GAGGAG	2 cut(s)	26, 167
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	7 cut(s)	770, 794, 1232, 1465, 1588, 1591, 1764
BseYI	CCCAGC	2 cut(s)	443, 1333
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	2 cut(s)	1681, 1854
Bsh1285I	CGRYCG	1 cut(s)	1549
BshFI	GGCC	5 cut(s)	294, 438, 504, 932, 1583
BshNI	GGYRCC	3 cut(s)	314, 460, 1707
BshTI	ACCGGT	1 cut(s)	1875
BsiEI	CGRYCG	1 cut(s)	1549
BsiHKAI	GWGCWC	2 cut(s)	1200, 2176
BsiHKCI	CYCGRG	2 cut(s)	879, 2148
BsiSI	CCGG	1 cut(s)	1876
BslFI	GGGAC	3 cut(s)	148, 497, 1185
BsmAI	GTCTC	7 cut(s)	9, 307, 503, 876, 1749, 2106, 2221
BsmBI	CGTCTC	1 cut(s)	1749
BsmFI	GGGAC	3 cut(s)	148, 497, 1185
BsmI	GAATGC	1 cut(s)	1692
BsnI	GGCC	5 cut(s)	294, 438, 504, 932, 1583
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	2 cut(s)	879, 2148
Bsp119I	TTCGAA	1 cut(s)	1033
Bsp1286I	GDGCHC	5 cut(s)	160, 463, 1093, 1200, 2176
Bsp1407I	TGTACA	2 cut(s)	426, 1187
Bsp143I	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
Bsp19I	CCATGG	2 cut(s)	274, 528
BspACI	CCGC	3 cut(s)	770, 1679, 1854
BspANI	GGCC	5 cut(s)	294, 438, 504, 932, 1583
BspCNI	CTCAG	4 cut(s)	94, 256, 926, 961
BspFNI	CGCG	2 cut(s)	1681, 1854
BspLI	GGNNCC	8 cut(s)	316, 462, 485, 486, 525, 843, 1173, 1709
BspOI	GCTAGC	1 cut(s)	1692
BspPI	GGATC	3 cut(s)	1136, 1838, 2246
BspQI	GCTCTTC	1 cut(s)	1098
BspT104I	TTCGAA	1 cut(s)	1033
BspT107I	GGYRCC	3 cut(s)	314, 460, 1707
BspTNI	GGTCTC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	1875
BsrGI	TGTACA	2 cut(s)	426, 1187
BsrI	ACTGG	6 cut(s)	20, 160, 1426, 1619, 1726, 2304
BssAI	RCCGGY	1 cut(s)	1875
BssECI	CCNNGG	6 cut(s)	274, 295, 514, 515, 528, 1711
BssMI	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
BssT1I	CCWWGG	2 cut(s)	274, 528
Bst2UI	CCWGG	5 cut(s)	297, 516, 1569, 1713, 1863
Bst4CI	ACNGT	4 cut(s)	920, 937, 2134, 2215
Bst6I	CTCTTC	3 cut(s)	35, 630, 1098
BstAPI	GCANNNNNTGC	1 cut(s)	1475
BstAUI	TGTACA	2 cut(s)	426, 1187
BstBI	TTCGAA	1 cut(s)	1033
BstC8I	GCNNGC	3 cut(s)	671, 805, 1690
BstDEI	CTNAG	5 cut(s)	81, 264, 913, 969, 2267
BstDSI	CCRYGG	2 cut(s)	274, 528
BstENI	CCTNNNNNAGG	1 cut(s)	1274
BstF5I	GGATG	5 cut(s)	23, 318, 979, 1812, 2125
BstFNI	CGCG	2 cut(s)	1681, 1854
BstH2I	RGCGCY	1 cut(s)	1736
BstHHI	GCGC	1 cut(s)	1735
BstKTI	GATC	6 cut(s)	23, 1144, 1543, 1846, 2254, 2314
BstMAI	GTCTC	7 cut(s)	9, 307, 503, 876, 1749, 2106, 2221
BstMBI	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
BstMCI	CGRYCG	1 cut(s)	1549
BstMWI	GCNNNNNNNGC	7 cut(s)	413, 804, 974, 1217, 1322, 1475, 1487
BstNI	CCWGG	5 cut(s)	297, 516, 1569, 1713, 1863
BstNSI	RCATGY	1 cut(s)	852
BstSCI	CCNGG	5 cut(s)	295, 514, 1567, 1711, 1861
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	2 cut(s)	1681, 1854
BstV1I	GCAGC	7 cut(s)	770, 794, 1232, 1465, 1588, 1591, 1764
BstV2I	GAAGAC	3 cut(s)	1083, 1379, 1550
BstX2I	RGATCY	2 cut(s)	1141, 2251
BstXI	CCANNNNNNTGG	1 cut(s)	1788
BstYI	RGATCY	2 cut(s)	1141, 2251
BsuI	GTATCC	1 cut(s)	2289
BsuRI	GGCC	5 cut(s)	294, 438, 504, 932, 1583
BtgI	CCRYGG	2 cut(s)	274, 528
BtrI	CACGTC	1 cut(s)	1183
BtsCI	GGATG	5 cut(s)	23, 318, 979, 1812, 2125
BtsI	GCAGTG	3 cut(s)	213, 678, 738
BtsIMutI	CAGTG	4 cut(s)	213, 678, 738, 1626
Cac8I	GCNNGC	3 cut(s)	671, 805, 1690
CaiI	CAGNNNCTG	2 cut(s)	983, 1601
CfoI	GCGC	1 cut(s)	1735
Cfr10I	RCCGGY	1 cut(s)	1875
Cfr13I	GGNCC	7 cut(s)	293, 484, 523, 1172, 1307, 1582, 1646
CseI	GACGC	1 cut(s)	1512
CsiI	ACCWGGT	1 cut(s)	1567
Csp6I	GTAC	9 cut(s)	118, 427, 1020, 1188, 1396, 1436, 1708, 2143, 2259
CspAI	ACCGGT	1 cut(s)	1875
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviAII	CATG	7 cut(s)	90, 275, 529, 849, 1440, 1913, 2116
CviQI	GTAC	9 cut(s)	118, 427, 1020, 1188, 1396, 1436, 1708, 2143, 2259
DdeI	CTNAG	5 cut(s)	81, 264, 913, 969, 2267
DpnI	GATC	6 cut(s)	22, 1143, 1542, 1845, 2253, 2313
DpnII	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
EaeI	YGGCCR	2 cut(s)	436, 930
Eam1104I	CTCTTC	3 cut(s)	35, 630, 1098
EarI	CTCTTC	3 cut(s)	35, 630, 1098
Eco130I	CCWWGG	2 cut(s)	274, 528
Eco24I	GRGCYC	2 cut(s)	160, 1093
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	5 cut(s)	484, 523, 1172, 1307, 1646
Eco57I	CTGAAG	3 cut(s)	309, 1373, 1578
Eco88I	CYCGRG	2 cut(s)	879, 2148
EcoNI	CCTNNNNNAGG	1 cut(s)	1274
EcoO109I	RGGNCCY	3 cut(s)	484, 523, 1172
EcoRII	CCWGG	5 cut(s)	295, 514, 1567, 1711, 1861
EcoT14I	CCWWGG	2 cut(s)	274, 528
EcoT38I	GRGCYC	2 cut(s)	160, 1093
ErhI	CCWWGG	2 cut(s)	274, 528
Esp3I	CGTCTC	1 cut(s)	1749
FaeI	CATG	7 cut(s)	93, 278, 532, 852, 1443, 1916, 2119
FalI	AAGNNNNNCTT	2 cut(s)	1396, 1428
FaqI	GGGAC	3 cut(s)	148, 497, 1185
FatI	CATG	7 cut(s)	89, 274, 528, 848, 1439, 1912, 2115
FauI	CCCGC	1 cut(s)	1686
FauNDI	CATATG	1 cut(s)	2316
FbaI	TGATCA	1 cut(s)	2311
Fnu4HI	GCNGC	8 cut(s)	770, 784, 808, 1221, 1479, 1602, 1605, 1778
FokI	GGATG	5 cut(s)	10, 305, 986, 1799, 2132
FriOI	GRGCYC	2 cut(s)	160, 1093
Fsp4HI	GCNGC	8 cut(s)	770, 784, 808, 1221, 1479, 1602, 1605, 1778
FspBI	CTAG	3 cut(s)	417, 1628, 1689
GlaI	GCGC	1 cut(s)	1734
GluI	GCNGC	8 cut(s)	770, 784, 808, 1221, 1479, 1602, 1605, 1778
GsaI	CCCAGC	2 cut(s)	447, 1337
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	1736
HaeIII	GGCC	5 cut(s)	294, 438, 504, 932, 1583
HapII	CCGG	1 cut(s)	1876
HgaI	GACGC	1 cut(s)	1512
HhaI	GCGC	1 cut(s)	1735
Hin1II	CATG	7 cut(s)	93, 278, 532, 852, 1443, 1916, 2119
Hin6I	GCGC	1 cut(s)	1733
HinP1I	GCGC	1 cut(s)	1733
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	334
HpaII	CCGG	1 cut(s)	1876
HphI	GGTGA	5 cut(s)	172, 901, 1727, 1798, 2321
Hpy166II	GTNNAC	3 cut(s)	450, 1188, 1646
Hpy188I	TCNGA	8 cut(s)	265, 742, 916, 951, 1163, 1195, 1450, 1741
Hpy188III	TCNNGA	7 cut(s)	222, 881, 1178, 1391, 1517, 1544, 2148
Hpy8I	GTNNAC	3 cut(s)	450, 1188, 1646
HpyAV	CCTTC	6 cut(s)	316, 333, 556, 1158, 1767, 1857
HpyCH4III	ACNGT	4 cut(s)	920, 937, 2134, 2215
HpyCH4IV	ACGT	3 cut(s)	1182, 1656, 1758
HpyF10VI	GCNNNNNNNGC	7 cut(s)	413, 804, 974, 1217, 1322, 1475, 1487
HpyF3I	CTNAG	5 cut(s)	81, 264, 913, 969, 2267
HpySE526I	ACGT	3 cut(s)	1182, 1656, 1758
Hsp92II	CATG	7 cut(s)	93, 278, 532, 852, 1443, 1916, 2119
HspAI	GCGC	1 cut(s)	1733
KflI	GGGWCCC	1 cut(s)	484
KpnI	GGTACC	1 cut(s)	1711
Ksp22I	TGATCA	1 cut(s)	2311
Kzo9I	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
LguI	GCTCTTC	1 cut(s)	1098
LmnI	GCTCC	1 cut(s)	2179
Lsp1109I	GCAGC	7 cut(s)	770, 794, 1232, 1465, 1588, 1591, 1764
LweI	GCATC	4 cut(s)	368, 913, 964, 1510
MabI	ACCWGGT	1 cut(s)	1567
MaeI	CTAG	3 cut(s)	417, 1628, 1689
MaeII	ACGT	3 cut(s)	1182, 1656, 1758
MaeIII	GTNAC	6 cut(s)	267, 352, 1343, 1524, 2056, 2066
MalI	GATC	6 cut(s)	22, 1143, 1542, 1845, 2253, 2313
MboI	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
MboII	GAAGA	9 cut(s)	22, 647, 1085, 1088, 1379, 1550, 1550, 1584, 1878
MflI	RGATCY	2 cut(s)	1141, 2251
MhlI	GDGCHC	5 cut(s)	160, 463, 1093, 1200, 2176
MlsI	TGGCCA	2 cut(s)	438, 932
MluNI	TGGCCA	2 cut(s)	438, 932
MlyI	GAGTC	5 cut(s)	275, 370, 1366, 1808, 2063
MmeI	TCCRAC	6 cut(s)	223, 234, 612, 849, 2173, 2308
Mox20I	TGGCCA	2 cut(s)	438, 932
MroXI	GAANNNNTTC	1 cut(s)	1470
MscI	TGGCCA	2 cut(s)	438, 932
MseI	TTAA	8 cut(s)	471, 650, 993, 1098, 1245, 1761, 1967, 2199
MslI	CAYNNNNRTG	1 cut(s)	1817
Msp20I	TGGCCA	2 cut(s)	438, 932
MspA1I	CMGCKG	1 cut(s)	2188
MspI	CCGG	1 cut(s)	1876
MspR9I	CCNGG	5 cut(s)	297, 516, 1569, 1713, 1863
Mva1269I	GAATGC	1 cut(s)	1692
MvaI	CCWGG	5 cut(s)	297, 516, 1569, 1713, 1863
MvnI	CGCG	2 cut(s)	1681, 1854
MwoI	GCNNNNNNNGC	7 cut(s)	413, 804, 974, 1217, 1322, 1475, 1487
NcoI	CCATGG	2 cut(s)	274, 528
NdeI	CATATG	1 cut(s)	2316
NdeII	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
NheI	GCTAGC	1 cut(s)	1688
NlaIII	CATG	7 cut(s)	93, 278, 532, 852, 1443, 1916, 2119
NlaIV	GGNNCC	8 cut(s)	316, 462, 485, 486, 525, 843, 1173, 1709
NmuCI	GTSAC	5 cut(s)	267, 352, 1524, 2056, 2066
NspI	RCATGY	1 cut(s)	852
NspV	TTCGAA	1 cut(s)	1033
PaeR7I	CTCGAG	2 cut(s)	879, 2148
PasI	CCCWGGG	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	1098
PctI	GAATGC	1 cut(s)	1692
PdmI	GAANNNNTTC	1 cut(s)	1470
PfeI	GAWTC	6 cut(s)	225, 240, 1354, 1451, 1624, 1994
PfoI	TCCNGGA	1 cut(s)	1861
PinAI	ACCGGT	1 cut(s)	1875
PkrI	GCNGC	8 cut(s)	771, 785, 809, 1222, 1480, 1603, 1606, 1779
PleI	GAGTC	5 cut(s)	274, 370, 1366, 1807, 2063
PpsI	GAGTC	5 cut(s)	274, 370, 1366, 1807, 2063
PpuMI	RGGWCCY	3 cut(s)	484, 523, 1172
PshBI	ATTAAT	1 cut(s)	471
Psp5II	RGGWCCY	3 cut(s)	484, 523, 1172
Psp6I	CCWGG	5 cut(s)	295, 514, 1567, 1711, 1861
PspFI	CCCAGC	2 cut(s)	443, 1333
PspGI	CCWGG	5 cut(s)	295, 514, 1567, 1711, 1861
PspN4I	GGNNCC	8 cut(s)	316, 462, 485, 486, 525, 843, 1173, 1709
PspPI	GGNCC	7 cut(s)	293, 484, 523, 1172, 1307, 1582, 1646
PspPPI	RGGWCCY	3 cut(s)	484, 523, 1172
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
PstNI	CAGNNNCTG	2 cut(s)	983, 1601
PsuI	RGATCY	2 cut(s)	1141, 2251
PvuII	CAGCTG	1 cut(s)	2188
RsaI	GTAC	9 cut(s)	119, 428, 1021, 1189, 1397, 1437, 1709, 2144, 2260
RsaNI	GTAC	9 cut(s)	118, 427, 1020, 1188, 1396, 1436, 1708, 2143, 2259
RseI	CAYNNNNRTG	1 cut(s)	1817
SapI	GCTCTTC	1 cut(s)	1098
SaqAI	TTAA	8 cut(s)	471, 650, 993, 1098, 1245, 1761, 1967, 2199
SatI	GCNGC	8 cut(s)	770, 784, 808, 1221, 1479, 1602, 1605, 1778
Sau3AI	GATC	6 cut(s)	20, 1141, 1540, 1843, 2251, 2311
Sau96I	GGNCC	7 cut(s)	293, 484, 523, 1172, 1307, 1582, 1646
SchI	GAGTC	5 cut(s)	275, 370, 1366, 1808, 2063
ScrFI	CCNGG	5 cut(s)	297, 516, 1569, 1713, 1863
SduI	GDGCHC	5 cut(s)	160, 463, 1093, 1200, 2176
SexAI	ACCWGGT	1 cut(s)	1567
SfaNI	GCATC	4 cut(s)	368, 913, 964, 1510
Sfr274I	CTCGAG	2 cut(s)	879, 2148
SfuI	TTCGAA	1 cut(s)	1033
SinI	GGWCC	5 cut(s)	484, 523, 1172, 1307, 1646
SlaI	CTCGAG	2 cut(s)	879, 2148
SmiMI	CAYNNNNRTG	1 cut(s)	1817
SmlI	CTYRAG	5 cut(s)	879, 1176, 1918, 2074, 2148
SmoI	CTYRAG	5 cut(s)	879, 1176, 1918, 2074, 2148
SsiI	CCGC	3 cut(s)	770, 1679, 1854
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	3 cut(s)	417, 1628, 1689
StyD4I	CCNGG	5 cut(s)	295, 514, 1567, 1711, 1861
StyI	CCWWGG	2 cut(s)	274, 528
TaaI	ACNGT	4 cut(s)	920, 937, 2134, 2215
TaiI	ACGT	3 cut(s)	1185, 1659, 1761
TaqI	TCGA	5 cut(s)	880, 1033, 1215, 2088, 2149
TaqII	GACCGA	1 cut(s)	1563
TatI	WGTACW	5 cut(s)	426, 1187, 1395, 2142, 2258
TauI	GCSGC	1 cut(s)	772
TfiI	GAWTC	6 cut(s)	225, 240, 1354, 1451, 1624, 1994
Tru1I	TTAA	8 cut(s)	471, 650, 993, 1098, 1245, 1761, 1967, 2199
Tru9I	TTAA	8 cut(s)	471, 650, 993, 1098, 1245, 1761, 1967, 2199
TscAI	CASTG	4 cut(s)	220, 685, 738, 1626
TseFI	GTSAC	5 cut(s)	267, 352, 1524, 2056, 2066
TseI	GCWGC	7 cut(s)	783, 807, 1220, 1478, 1601, 1604, 1777
Tsp45I	GTSAC	5 cut(s)	267, 352, 1524, 2056, 2066
TspDTI	ATGAA	5 cut(s)	1835, 1844, 2067, 2117, 2180
TspGWI	ACGGA	3 cut(s)	1019, 1099, 1109
TspRI	CASTG	4 cut(s)	220, 685, 738, 1626
VpaK11BI	GGWCC	5 cut(s)	484, 523, 1172, 1307, 1646
VspI	ATTAAT	1 cut(s)	471
XagI	CCTNNNNNAGG	1 cut(s)	1274
XapI	RAATTY	2 cut(s)	1204, 1930
XceI	RCATGY	1 cut(s)	852
XcmI	CCANNNNNNNNNTGG	2 cut(s)	252, 512
XhoI	CTCGAG	2 cut(s)	879, 2148
XmnI	GAANNNNTTC	1 cut(s)	1470
XspI	CTAG	3 cut(s)	417, 1628, 1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.