Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001084

Physical Location & Seq

Genomic Coordinates Forward (+)

28771352 .. 28797751

Gene Structure 26400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGATGAAGAGGAATTTGGAGGGTTTGGATAGGGAAGAATATGGTTTAGAGTGTGGGGAGAAGCTGGGTGTTATGCGTTTTCGGCGATGGGTGGTTATCAAAGGGAATGGGCATTTACCTACAATGTTCTGCTTACACAATGCTGTTGTCCAGTTTGGGACTGCGGGAGCTTGTGGAGGCAATATTGCTGCTTCACTCATTCGTGTTCCAATGGAGATAGAGCAAAGGATGCAAACGGGGCAATTCACATCCGCCTCTGCTGCTGTTCGCCTTATTGCTGCTAAGGAGGGCTTCAAAGGACTCTATGCGGCAAAGAGAGAGCTCAACGATCCTGAGAATGCTATAATTGGAGCTTTTGCAGGTGCATTAACTGGAGTTATAACCACTCCCCTTGATCTAATTAAAACTAGACTAATGGTACAGTACAAAGGAATTGTTGACTGTGTTCGGACTATTGTGAGGGAAGGACCTCCCGCTCTTTTGAAGGGTATTGGACCAAGAGTGCTGTGGATAGGGATTGGCGGTTCAATCTTTTTTGGTGTTTTCGAGAGAACAAAGCGCTTCCTTGCTCAGGGACTACCAACAGTTGGTGAAGACACGAAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000095 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006855 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015238 GO:0015805 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0072348 GO:1901682 GO:1901962

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

205

Amino Acids

22.22

Weight (kDa)

9.3

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	112 - 191	4.7e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39460 AT4G39460 AT4G39460
fragaria_vesca	FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000 FvH4_1g23000
malus_domestica	MD04G1037000.v1.1
prunus_persica	Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1 Prupe.6G168500_v2.0.a1
pyrus_communis	pycom04g03010
rosa_chinensis	RchiOBHm_Chr2g0116971 RchiOBHm_Chr2g0117281 RchiOBHm_Chr2g0117301 RchiOBHm_Chr2g0117311 RchiOBHm_Chr2g0117551 RchiOBHm_Chr5g0051511 RchiOBHm_Chr5g0051531
rosa_laevigata	RLG00000018317 RLG00000018342 RLG00000018354 RLG00000018362
rosa_multiflora	Rmu_sc0002009.1_g000026 Rmu_sc0011969.1_g000004 Rmu_ssc0000238.1_g000011
rosa_roxburghii	Rroxscaffold_2G00126420 Rroxscaffold_2G00126590 Rroxscaffold_2G00126840
rosa_rugosa	Rorug02G0209100 Rorug02G0209200 Rorug02G0209300 Rorug02G0209400 Rorug02G0213000 Rorug02G0213100
rosa_samantha	Rh2AG264000 Rh2AG265200 Rh2AG268600 Rh2AG269200 Rh2AG399100 Rh2BG277000 Rh2BG279500 Rh2BG280900 Rh2CG271400 Rh2DG275700 Rh2DG295200 Rh5BG362400 Rh6DG190800
rosa_wichuraiana	Rw2G021140 Rw2G021250 Rw2G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	479
AciI	CCGC	5 cut(s)	167, 255, 311, 477, 525
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	2 cut(s)	423, 428
AfeI	AGCGCT	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	574, 590
AgsI	TTSAA	3 cut(s)	298, 487, 531
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AloI	GAACNNNNNNTCC	2 cut(s)	511, 543
AluBI	AGCT	4 cut(s)	67, 173, 325, 356
AluI	AGCT	4 cut(s)	67, 173, 325, 356
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	563
ApeKI	GCWGC	3 cut(s)	191, 263, 281
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	470, 497
AsuHPI	GGTGA	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	470, 497
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	178, 250, 268
BccI	CCATC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	4 cut(s)	192, 264, 282, 312
BlsI	GCNGC	4 cut(s)	193, 265, 283, 313
Bme18I	GGWCC	2 cut(s)	470, 497
BmgT120I	GGNCC	2 cut(s)	470, 497
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	2 cut(s)	285, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 590
Bse1I	ACTGG	2 cut(s)	154, 379
BseGI	GGATG	2 cut(s)	237, 251
BseLI	CCNNNNNNNGG	2 cut(s)	574, 590
BseMII	CTCAG	2 cut(s)	327, 587
BseNI	ACTGG	2 cut(s)	154, 379
BseXI	GCAGC	3 cut(s)	178, 250, 268
BseYI	CCCAGC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	175, 591
BslI	CCNNNNNNNGG	2 cut(s)	574, 590
BsmFI	GGGAC	2 cut(s)	175, 591
BsmI	GAATGC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	331, 397
BspACI	CCGC	5 cut(s)	167, 255, 311, 477, 525
BspCNI	CTCAG	2 cut(s)	328, 586
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	154, 379
BssMI	GATC	2 cut(s)	331, 397
Bst4CI	ACNGT	3 cut(s)	426, 446, 589
Bst6I	CTCTTC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstDEI	CTNAG	3 cut(s)	285, 336, 573
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	237, 251
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	2 cut(s)	334, 400
BstMBI	GATC	2 cut(s)	331, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 232, 241, 263
BstV1I	GCAGC	3 cut(s)	178, 250, 268
BstV2I	GAAGAC	1 cut(s)	603
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	237, 251
BveI	ACCTGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	470, 497
Csp6I	GTAC	2 cut(s)	422, 427
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviJI	RGCY	5 cut(s)	67, 173, 294, 325, 356
CviKI_1	RGCY	5 cut(s)	67, 173, 294, 325, 356
CviQI	GTAC	2 cut(s)	422, 427
DdeI	CTNAG	3 cut(s)	285, 336, 573
DpnI	GATC	2 cut(s)	333, 399
DpnII	GATC	2 cut(s)	331, 397
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	470, 497
Eco47III	AGCGCT	1 cut(s)	563
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	327
FaiI	YATR	5 cut(s)	45, 77, 309, 347, 383
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	2 cut(s)	175, 591
FauI	CCCGC	2 cut(s)	160, 484
Fnu4HI	GCNGC	4 cut(s)	192, 264, 282, 312
FokI	GGATG	2 cut(s)	238, 244
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	192, 264, 282, 312
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	4 cut(s)	192, 264, 282, 312
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	565
HhaI	GCGC	1 cut(s)	564
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	2 cut(s)	335, 550
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	461, 481
HpyCH4III	ACNGT	3 cut(s)	426, 446, 589
HpyCH4V	TGCA	3 cut(s)	235, 362, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 232, 241, 263
HpyF3I	CTNAG	3 cut(s)	285, 336, 573
HspAI	GCGC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	331, 397
LmnI	GCTCC	2 cut(s)	170, 353
LpnPI	CCDG	7 cut(s)	53, 167, 348, 348, 360, 560, 593
Lsp1109I	GCAGC	3 cut(s)	178, 250, 268
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	411
MalI	GATC	2 cut(s)	333, 399
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	2 cut(s)	331, 397
MboII	GAAGA	3 cut(s)	22, 50, 608
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	5 cut(s)	16, 245, 348, 402, 435
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	6, 16, 173, 268, 283, 456, 483
MseI	TTAA	2 cut(s)	371, 405
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	4 cut(s)	85, 232, 241, 263
NdeII	GATC	2 cut(s)	331, 397
PaqCI	CACCTGC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	193, 265, 283, 313
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PpuMI	RGGWCCY	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	470, 497
PspPPI	RGGWCCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	423, 428
RsaNI	GTAC	2 cut(s)	422, 427
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	371, 405
SatI	GCNGC	4 cut(s)	192, 264, 282, 312
Sau3AI	GATC	2 cut(s)	331, 397
Sau96I	GGNCC	2 cut(s)	470, 497
SchI	GAGTC	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	7 cut(s)	69, 124, 175, 327, 358, 367, 475
SfaNI	GCATC	1 cut(s)	222
SinI	GGWCC	2 cut(s)	470, 497
Sse9I	AATT	5 cut(s)	16, 245, 348, 402, 435
SsiI	CCGC	5 cut(s)	167, 255, 311, 477, 525
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	426, 446, 589
TaqI	TCGA	1 cut(s)	549
TasI	AATT	5 cut(s)	16, 245, 348, 402, 435
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	371, 405
Tru9I	TTAA	2 cut(s)	371, 405
TseI	GCWGC	3 cut(s)	191, 263, 281
TspDTI	ATGAA	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	470, 497
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.