Rroxscaffold_2G00126590

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
61947212 .. 61956627
9416 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00126590.1

Sequence Viewer

Length: 303 bp
ATGGCTCCTCTTACTCTGGCCGTCAATTCGGAAAGCTTTACTTGTCCGTTGACTCCAATTACTAAGATGCCCGGCTTTCTGAGTTTCATGTGTTCTAAGTTTCTGAGTTTCATACATTGTGGAAGAATTGGATTTTTATTTGATGGATGTGGCAAGAAATTTCGGAAAGTTTCTATGGCAAAGCGCAAGTCTTTTGCATCTGTCAGCATGCAGGACGATAAGCCATTTGATTTCTTACGTACTTTATTTGAGGGTATTATAGCAGGAGGTACAGCTGGGGTTGTTGTTGAAAGAGCTTTATAA

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

9.51

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 2 cut(s) 241, 271
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 3 cut(s) 36, 275, 296
AluI AGCT 3 cut(s) 36, 275, 296
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 72
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 5
BcnI CCSGG 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 57, 206
BpuMI CCSGG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 239
BseGI GGATG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 71, 95
BseYI CCCAGC 1 cut(s) 275
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 72
BsnI GGCC 1 cut(s) 20
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 72, 96
BspLI GGNNCC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 63, 80, 96, 104
BstF5I GGATG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 70
BstSNI TACGTA 1 cut(s) 239
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 209
CfoI GCGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 240, 270
CviAII CATG 2 cut(s) 88, 208
CviJI RGCY 7 cut(s) 5, 20, 36, 75, 223, 275, 296
CviKI_1 RGCY 7 cut(s) 5, 20, 36, 75, 223, 275, 296
CviQI GTAC 2 cut(s) 240, 270
DdeI CTNAG 4 cut(s) 63, 80, 96, 104
EaeI YGGCCR 1 cut(s) 18
Eco105I TACGTA 1 cut(s) 239
FaeI CATG 2 cut(s) 91, 211
FaiI YATR 6 cut(s) 89, 113, 176, 209, 260, 301
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 2 cut(s) 87, 207
FokI GGATG 1 cut(s) 159
GlaI GCGC 1 cut(s) 185
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 91, 211
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 31, 81, 105, 165
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 197, 211
HpyF3I CTNAG 4 cut(s) 63, 80, 96, 104
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 2 cut(s) 91, 211
HspAI GCGC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 2, 85, 197, 249, 261
LweI GCATC 2 cut(s) 57, 206
MaeII ACGT 1 cut(s) 238
MboII GAAGA 1 cut(s) 135
MluCI AATT 4 cut(s) 25, 57, 126, 158
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 18, 244, 260
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
NciI CCSGG 1 cut(s) 72
NlaIII CATG 2 cut(s) 91, 211
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 239
PsiI TTATAA 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 241, 271
RsaNI GTAC 2 cut(s) 240, 270
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 38, 241, 271, 277, 298
SfaNI GCATC 2 cut(s) 57, 206
SnaBI TACGTA 1 cut(s) 239
SphI GCATGC 1 cut(s) 211
Sse9I AATT 4 cut(s) 25, 57, 126, 158
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 1 cut(s) 241
TasI AATT 4 cut(s) 25, 57, 126, 158
TspDTI ATGAA 2 cut(s) 76, 100
TspGWI ACGGA 1 cut(s) 36
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.