AT5G15780

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001665
Physical Location & Seq
Reverse (-)
5144629 .. 5146458
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15780.1

Sequence Viewer

Length: 1206 bp
ATGGAGAGAATAACGACCTTATGGTTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATCAATGGAGGTTTGTCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTAGGAACTGTCTACTGTGACACTTGTTTTAACGGCGCCTTCTCGAAATCACCCAACCACTTAATCTCAGGTGCTTTAGTTGCAGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTCAGACAAGAAGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAAACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAGCCTTACTGTTCTATAGCTTCGTCTGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGGAGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGAGATTTGTAGCCAAAAACCTATCAATCTCCGCGGTTCCAAGCCTCTTTTACCGGATCCTTCATTTCCTCCACCGCTCCAAGATCCTCCTAATCCTTCCCCTCTCCCAAATCTCCCTATCGTTCCTCCTCTTCCAAACTTACCTGTTCCAAAGTTACCTGTTCCGGACTTACCTCTTCCTCTAGTTCCTCCTCTTCTTCCACCAGGACCTCAGAAATCAGCTTCCTTGCATAACAAGAAATCTGATTCCTTGAAAGACAAGAAAACCGAAGCACTAAAACCCAATTTCTTCTTTCCGCCAAACCCGTTAAACCCGCCATCTATCATCCCTCCAAACCCGCTCATTCCTTCTATCCCAACCCCTACTCTCCCTCCAAACCCGCTTATTCCTTCTCCCCCAAGTCTCCCTCCAATCCCACTAATCCCTACTCCCCCAACTCTCCCTACAATTCCGTTACTTCCTACTCCCCCGACTCCTACTCTGCCACCGATTCCAACAATTCCGACTCTTCCACCTCTTCCGGTTCTTCCACCTGTCCCTATCGTGAATCCGCCTTCACTACCGCCACCACCACCTTCTTTCCCTGTTCCGCTCCCTCCGGTCCCTGGACTCCCTGGCATCCCTCCGGTCCCTCTTATCCCTGGAATCCCTCCGGCCCCTCTCATCCCGGGAATCCCTCCTCTTTCACCTTCCTTTTCTAGTCACCATCAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

401

Amino Acids

42.98

Weight (kDa)

9.82

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 42 - 131 1.3e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccBSI CCGCTC 3 cut(s) 565, 829, 1081
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 273, 522
AccIII TCCGGA 1 cut(s) 652
AclWI GGATC 3 cut(s) 539, 552, 566
AcsI RAATTY 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 1094
AflIII ACRYGT 3 cut(s) 91, 107, 313
AgsI TTSAA 2 cut(s) 283, 742
AjnI CCWGG 4 cut(s) 691, 1093, 1102, 1129
AluBI AGCT 4 cut(s) 292, 357, 380, 710
AluI AGCT 4 cut(s) 292, 357, 380, 710
Alw26I GTCTC 2 cut(s) 81, 896
AlwI GGATC 3 cut(s) 539, 552, 566
Ama87I CYCGRG 1 cut(s) 1156
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 1 cut(s) 1143
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 2 cut(s) 164, 273
AspS9I GGNCC 4 cut(s) 695, 1090, 1117, 1144
AsuC2I CCSGG 2 cut(s) 1157, 1158
AsuHPI GGTGA 3 cut(s) 168, 1167, 1184
AvaI CYCGRG 1 cut(s) 1156
AvaII GGWCC 3 cut(s) 695, 1090, 1117
BamHI GGATCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 110
BccI CCATC 3 cut(s) 432, 814, 1203
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 4 cut(s) 693, 1095, 1104, 1131
BcnI CCSGG 2 cut(s) 1157, 1158
BcoDI GTCTC 2 cut(s) 81, 896
BfaI CTAG 3 cut(s) 441, 671, 1188
BfmI CTRYAG 3 cut(s) 117, 375, 453
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 6 cut(s) 693, 1095, 1104, 1131, 1157, 1158
Bme18I GGWCC 3 cut(s) 695, 1090, 1117
BmeT110I CYCGRG 1 cut(s) 1156
BmgT120I GGNCC 4 cut(s) 695, 1090, 1117, 1144
BmiI GGNNCC 6 cut(s) 163, 526, 546, 1092, 1119, 1146
BmrFI CCNGG 6 cut(s) 693, 1095, 1104, 1131, 1157, 1158
BmsI GCATC 2 cut(s) 323, 1116
BpiI GAAGAC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 1157, 1158
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 5 cut(s) 520, 1093, 1102, 1129, 1156
BsaWI WCCGGW 5 cut(s) 541, 652, 1009, 1087, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 1094
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 4 cut(s) 693, 1095, 1104, 1131
BseDI CCNNGG 5 cut(s) 520, 1093, 1102, 1129, 1156
BseGI GGATG 3 cut(s) 813, 1107, 1152
BseLI CCNNNNNNNGG 1 cut(s) 1094
BseMII CTCAG 2 cut(s) 207, 713
BseRI GAGGAG 3 cut(s) 606, 669, 1158
Bsh1236I CGCG 2 cut(s) 273, 522
BshFI GGCC 1 cut(s) 1145
BshNI GGYRCC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 1156
BsiSI CCGG 7 cut(s) 542, 653, 1010, 1088, 1115, 1142, 1157
BslFI GGGAC 3 cut(s) 1010, 1076, 1103
BslI CCNNNNNNNGG 1 cut(s) 1094
BsmAI GTCTC 2 cut(s) 81, 896
BsmFI GGGAC 3 cut(s) 1010, 1076, 1103
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 1145
BsoBI CYCGRG 1 cut(s) 1156
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 3 cut(s) 324, 544, 571
BspANI GGCC 1 cut(s) 1145
BspCNI CTCAG 2 cut(s) 206, 712
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 2 cut(s) 273, 522
BspLI GGNNCC 6 cut(s) 163, 526, 546, 1092, 1119, 1146
BspMAI CTGCAG 2 cut(s) 121, 457
BspPI GGATC 3 cut(s) 539, 552, 566
BspT107I GGYRCC 1 cut(s) 161
BsrBI CCGCTC 3 cut(s) 565, 829, 1081
BssECI CCNNGG 5 cut(s) 520, 1093, 1102, 1129, 1156
BssMI GATC 3 cut(s) 324, 544, 571
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 4 cut(s) 693, 1095, 1104, 1131
Bst4CI ACNGT 3 cut(s) 136, 143, 371
Bst6I CTCTTC 5 cut(s) 624, 669, 687, 1002, 1011
BstACI GRCGYC 1 cut(s) 162
BstDEI CTNAG 4 cut(s) 49, 193, 350, 699
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 3 cut(s) 813, 1107, 1152
BstFNI CGCG 2 cut(s) 273, 522
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 164, 273
BstKTI GATC 3 cut(s) 327, 547, 574
BstMAI GTCTC 2 cut(s) 81, 896
BstMBI GATC 3 cut(s) 324, 544, 571
BstMWI GCNNNNNNNGC 2 cut(s) 206, 386
BstNI CCWGG 4 cut(s) 693, 1095, 1104, 1131
BstNSI RCATGY 2 cut(s) 95, 317
BstSCI CCNGG 6 cut(s) 691, 1093, 1102, 1129, 1155, 1156
BstSFI CTRYAG 3 cut(s) 117, 375, 453
BstUI CGCG 2 cut(s) 273, 522
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 544, 571
BstYI RGATCY 2 cut(s) 544, 571
BsuRI GGCC 1 cut(s) 1145
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 3 cut(s) 813, 1107, 1152
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
CfoI GCGC 2 cut(s) 164, 273
Cfr13I GGNCC 4 cut(s) 695, 1090, 1117, 1144
Cfr42I CCGCGG 1 cut(s) 523
Cfr9I CCCGGG 1 cut(s) 1156
CviAII CATG 3 cut(s) 92, 314, 428
CviJI RGCY 8 cut(s) 292, 357, 364, 380, 501, 532, 710, 1145
CviKI_1 RGCY 8 cut(s) 292, 357, 364, 380, 501, 532, 710, 1145
DdeI CTNAG 4 cut(s) 49, 193, 350, 699
DinI GGCGCC 1 cut(s) 163
DpnI GATC 3 cut(s) 326, 546, 573
DpnII GATC 3 cut(s) 324, 544, 571
Eam1104I CTCTTC 5 cut(s) 624, 669, 687, 1002, 1011
EarI CTCTTC 5 cut(s) 624, 669, 687, 1002, 1011
EciI GGCGGA 2 cut(s) 774, 1029
Eco47I GGWCC 3 cut(s) 695, 1090, 1117
Eco88I CYCGRG 1 cut(s) 1156
EcoO109I RGGNCCY 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 4 cut(s) 691, 1093, 1102, 1129
EcoT22I ATGCAT 1 cut(s) 221
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
FaeI CATG 3 cut(s) 95, 317, 431
FaiI YATR 8 cut(s) 22, 41, 93, 98, 315, 377, 429, 720
FaqI GGGAC 3 cut(s) 1010, 1076, 1103
FatI CATG 3 cut(s) 91, 313, 427
FauI CCCGC 3 cut(s) 810, 834, 876
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 3 cut(s) 800, 1094, 1139
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 3 cut(s) 441, 671, 1188
GlaI GCGC 2 cut(s) 163, 272
GluI GCNGC 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 1145
HapII CCGG 7 cut(s) 542, 653, 1010, 1088, 1115, 1142, 1157
HhaI GCGC 2 cut(s) 164, 273
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 3 cut(s) 95, 317, 431
Hin6I GCGC 2 cut(s) 162, 271
HinP1I GCGC 2 cut(s) 162, 271
HinfI GANTC 9 cut(s) 54, 734, 961, 979, 994, 1036, 1098, 1134, 1161
HpaII CCGG 7 cut(s) 542, 653, 1010, 1088, 1115, 1142, 1157
HphI GGTGA 3 cut(s) 168, 1167, 1184
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 248, 473, 702, 733, 993
Hpy188III TCNNGA 4 cut(s) 169, 328, 653, 1033
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 8 cut(s) 175, 558, 594, 846, 888, 1053, 1074, 1188
HpyCH4III ACNGT 3 cut(s) 136, 143, 371
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 5 cut(s) 119, 209, 219, 455, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 386
HpyF3I CTNAG 4 cut(s) 49, 193, 350, 699
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 3 cut(s) 95, 317, 431
HspAI GCGC 2 cut(s) 162, 271
KasI GGCGCC 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 652
KspI CCGCGG 1 cut(s) 523
Kzo9I GATC 3 cut(s) 324, 544, 571
LmnI GCTCC 2 cut(s) 570, 1086
LweI GCATC 2 cut(s) 323, 1116
MaeI CTAG 3 cut(s) 441, 671, 1188
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 4 cut(s) 143, 642, 942, 1190
MalI GATC 3 cut(s) 326, 546, 573
MbiI CCGCTC 3 cut(s) 565, 829, 1081
MboI GATC 3 cut(s) 324, 544, 571
MflI RGATCY 2 cut(s) 544, 571
MluCI AATT 4 cut(s) 278, 772, 936, 987
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 3 cut(s) 955, 988, 1092
MmeI TCCRAC 2 cut(s) 1007, 1016
Mph1103I ATGCAT 1 cut(s) 221
MroI TCCGGA 1 cut(s) 652
MseI TTAA 4 cut(s) 156, 188, 414, 797
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 7 cut(s) 542, 653, 1010, 1088, 1115, 1142, 1157
MspR9I CCNGG 6 cut(s) 693, 1095, 1104, 1131, 1157, 1158
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 4 cut(s) 693, 1095, 1104, 1131
MvnI CGCG 2 cut(s) 273, 522
MwoI GCNNNNNNNGC 2 cut(s) 206, 386
NarI GGCGCC 1 cut(s) 162
NciI CCSGG 2 cut(s) 1157, 1158
NdeII GATC 3 cut(s) 324, 544, 571
NlaIII CATG 3 cut(s) 95, 317, 431
NlaIV GGNNCC 6 cut(s) 163, 526, 546, 1092, 1119, 1146
NmuCI GTSAC 2 cut(s) 143, 1190
NsiI ATGCAT 1 cut(s) 221
NspI RCATGY 2 cut(s) 95, 317
PciI ACATGT 2 cut(s) 91, 313
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 6 cut(s) 54, 734, 979, 1036, 1134, 1161
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 3 cut(s) 955, 988, 1092
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 3 cut(s) 955, 988, 1092
PpuMI RGGWCCY 1 cut(s) 695
PscI ACATGT 2 cut(s) 91, 313
Psp5II RGGWCCY 1 cut(s) 695
Psp6I CCWGG 4 cut(s) 691, 1093, 1102, 1129
PspGI CCWGG 4 cut(s) 691, 1093, 1102, 1129
PspN4I GGNNCC 6 cut(s) 163, 526, 546, 1092, 1119, 1146
PspPI GGNCC 4 cut(s) 695, 1090, 1117, 1144
PspPPI RGGWCCY 1 cut(s) 695
PstI CTGCAG 2 cut(s) 121, 457
PsuI RGATCY 2 cut(s) 544, 571
SacII CCGCGG 1 cut(s) 523
SaqAI TTAA 4 cut(s) 156, 188, 414, 797
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 3 cut(s) 324, 544, 571
Sau96I GGNCC 4 cut(s) 695, 1090, 1117, 1144
SchI GAGTC 3 cut(s) 955, 988, 1092
ScrFI CCNGG 6 cut(s) 693, 1095, 1104, 1131, 1157, 1158
SfaNI GCATC 2 cut(s) 323, 1116
SfcI CTRYAG 3 cut(s) 117, 375, 453
SfoI GGCGCC 1 cut(s) 163
Sfr303I CCGCGG 1 cut(s) 523
SgrBI CCGCGG 1 cut(s) 523
SinI GGWCC 3 cut(s) 695, 1090, 1117
SmaI CCCGGG 1 cut(s) 1158
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 4 cut(s) 278, 772, 936, 987
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 3 cut(s) 441, 671, 1188
StyD4I CCNGG 6 cut(s) 691, 1093, 1102, 1129, 1155, 1156
TaaI ACNGT 3 cut(s) 136, 143, 371
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 170, 233
TasI AATT 4 cut(s) 278, 772, 936, 987
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 6 cut(s) 54, 734, 979, 1036, 1134, 1161
Tru1I TTAA 4 cut(s) 156, 188, 414, 797
Tru9I TTAA 4 cut(s) 156, 188, 414, 797
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 2 cut(s) 143, 1190
Tsp45I GTSAC 2 cut(s) 143, 1190
TspDTI ATGAA 2 cut(s) 113, 540
TspGWI ACGGA 1 cut(s) 930
TspMI CCCGGG 1 cut(s) 1156
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 3 cut(s) 695, 1090, 1117
XapI RAATTY 1 cut(s) 278
XceI RCATGY 2 cut(s) 95, 317
XmaI CCCGGG 1 cut(s) 1156
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 3 cut(s) 441, 671, 1188
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.