Rh2AG579000

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001665
Physical Location & Seq
Reverse (-)
80858099 .. 80859740
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG579000.1

Sequence Viewer

Length: 1089 bp
ATGTCTTGGTTTCTAACCATATTCCTTCTCATTAGTCTAGCATTTATCACTTCTTCAGAGGCTAACCATGAGGAGAAGGTTCAATCTGCCGTTGTTATAGGCAAAGTATACTGTGATACATGCTTCCAAGACGGGTTCGCGAAAACTAGCCACTTCATTTCTGGGGCCTCTGTTGGTGTGGAGTGCAAAGATGAGAGTTCATTGAAGCCAAGTTTTCAGGCACAAGTGAAAACAGATAACCAAGGAGTGTTCAAAGTCCACTTGCCTTTCTCAGTAAGCAAACATGTAAAGGAAATTGAAGGGTGTTCTGTGAAGCTAATCAGCAGCAGTGAACCCCACTGTGCTGTGGCCTCAACAGCAGCTTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGAACACACATTTTCTCAGCTGGGTTTTTCGCCTTCAAGCCCCTAAAGCAAGGCAACCTATGTAACCAAAAATCAAGCGCCAACAAGCTGCCATTTTCCTCACCAATTCAACAACAAGACTTGTTGGGAATTGGACTCCCAGGTCTTCCAGGACTACCAGGTTTGCCGGGACTTCCAGGTCTACCTGGACTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGTAGAGAGGCACCTAATTGGCCTGGGCCTTCCCGGACTCCCGGGTCTTCCTGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGTTACTTCTAAGGTAGAGAGGCACCTAATTGGCCTGGGTCTTCCCGGACTCCCGGGTCTTCCTGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGTAGAGAGGCACCTTCTTGTCCTGGGTCTTCCGGGTCTCCCAGGACTCCCAGGACTTCCAGGACTCCCAGGAATCGGAGCCCGCACAGAAAAAATTACAGAGAAAAATGATGATGGAGCCCAGGTCGTCCCACTTGCTTCTTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

362

Amino Acids

37.54

Weight (kDa)

8.45

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 6.1e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 5 cut(s) 537, 573, 591, 726, 852
AccB1I GGYRCC 3 cut(s) 693, 819, 945
AccI GTMKAC 2 cut(s) 108, 577
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 1018
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 4 cut(s) 623, 749, 875, 1010
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 6 cut(s) 83, 205, 253, 299, 433, 506
AluBI AGCT 7 cut(s) 316, 362, 416, 484, 629, 755, 881
AluI AGCT 7 cut(s) 316, 362, 416, 484, 629, 755, 881
Alw21I GWGCWC 3 cut(s) 631, 757, 883
Alw26I GTCTC 1 cut(s) 977
Ama87I CYCGRG 2 cut(s) 724, 850
AoxI GGCC 5 cut(s) 165, 348, 703, 709, 829
ApeKI GCWGC 3 cut(s) 324, 359, 484
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 2 cut(s) 165, 709
AsuC2I CCSGG 9 cut(s) 564, 591, 717, 725, 726, 843, 851, 852, 969
AsuHPI GGTGA 1 cut(s) 489
AvaI CYCGRG 2 cut(s) 724, 850
BanI GGYRCC 3 cut(s) 693, 819, 945
BanII GRGCYC 5 cut(s) 631, 757, 883, 1018, 1057
BbsI GAAGAC 6 cut(s) 533, 587, 722, 830, 848, 956
Bbv12I GWGCWC 3 cut(s) 631, 757, 883
BbvI GCAGC 3 cut(s) 336, 371, 471
BccI CCATC 1 cut(s) 1043
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 9 cut(s) 564, 591, 717, 725, 726, 843, 851, 852, 969
BcoDI GTCTC 1 cut(s) 977
BfaI CTAG 2 cut(s) 38, 147
BfoI RGCGCY 1 cut(s) 477
BisI GCNGC 3 cut(s) 325, 360, 485
BlpI GCTNAGC 3 cut(s) 630, 756, 882
BlsI GCNGC 3 cut(s) 326, 361, 486
BmeT110I CYCGRG 2 cut(s) 724, 850
BmgT120I GGNCC 2 cut(s) 165, 709
BmiI GGNNCC 6 cut(s) 166, 695, 821, 947, 1015, 1054
BpiI GAAGAC 6 cut(s) 533, 587, 722, 830, 848, 956
Bpu1102I GCTNAGC 3 cut(s) 630, 756, 882
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 9 cut(s) 564, 591, 717, 725, 726, 843, 851, 852, 969
BsaI GGTCTC 1 cut(s) 977
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 4 cut(s) 623, 749, 875, 1010
BseLI CCNNNNNNNGG 4 cut(s) 623, 749, 875, 1010
BseMII CTCAG 5 cut(s) 285, 426, 644, 770, 896
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 336, 371, 471
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 5 cut(s) 167, 350, 705, 711, 831
BshNI GGYRCC 3 cut(s) 693, 819, 945
BsiHKAI GWGCWC 3 cut(s) 631, 757, 883
BsiHKCI CYCGRG 2 cut(s) 724, 850
BsiSI CCGG 7 cut(s) 563, 590, 717, 725, 843, 851, 968
BslFI GGGAC 2 cut(s) 579, 1049
BslI CCNNNNNNNGG 4 cut(s) 623, 749, 875, 1010
BsmAI GTCTC 1 cut(s) 977
BsmFI GGGAC 2 cut(s) 579, 1049
BsnI GGCC 5 cut(s) 167, 350, 705, 711, 831
Bso31I GGTCTC 1 cut(s) 977
BsoBI CYCGRG 2 cut(s) 724, 850
Bsp1286I GDGCHC 5 cut(s) 631, 757, 883, 1018, 1057
Bsp1720I GCTNAGC 3 cut(s) 630, 756, 882
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 1 cut(s) 1018
BspANI GGCC 5 cut(s) 167, 350, 705, 711, 831
BspCNI CTCAG 5 cut(s) 284, 425, 643, 769, 895
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 6 cut(s) 166, 695, 821, 947, 1015, 1054
BspT107I GGYRCC 3 cut(s) 693, 819, 945
BspTNI GGTCTC 1 cut(s) 977
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 113, 341, 799
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 8 cut(s) 271, 412, 630, 681, 756, 807, 882, 933
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstMAI GTCTC 1 cut(s) 977
BstMWI GCNNNNNNNGC 2 cut(s) 356, 442
BstNSI RCATGY 2 cut(s) 123, 287
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 336, 371, 471
BstV2I GAAGAC 6 cut(s) 533, 587, 722, 830, 848, 956
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 5 cut(s) 167, 350, 705, 711, 831
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 337
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 1018
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 165, 709
Cfr9I CCCGGG 2 cut(s) 724, 850
CsiI ACCWGGT 1 cut(s) 553
CviAII CATG 3 cut(s) 68, 120, 284
DdeI CTNAG 8 cut(s) 271, 412, 630, 681, 756, 807, 882, 933
DrdI GACNNNNNNGTC 5 cut(s) 537, 573, 591, 726, 852
DseDI GACNNNNNNGTC 5 cut(s) 537, 573, 591, 726, 852
Ecl136II GAGCTC 3 cut(s) 629, 755, 881
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 5 cut(s) 631, 757, 883, 1018, 1057
Eco31I GGTCTC 1 cut(s) 977
Eco53kI GAGCTC 3 cut(s) 629, 755, 881
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 724, 850
EcoICRI GAGCTC 3 cut(s) 629, 755, 881
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 5 cut(s) 631, 757, 883, 1018, 1057
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 7 cut(s) 20, 69, 98, 109, 121, 285, 457
FaqI GGGAC 2 cut(s) 579, 1049
FatI CATG 3 cut(s) 67, 119, 283
FauI CCCGC 1 cut(s) 1025
FblI GTMKAC 2 cut(s) 108, 577
Fnu4HI GCNGC 3 cut(s) 325, 360, 485
FriOI GRGCYC 5 cut(s) 631, 757, 883, 1018, 1057
Fsp4HI GCNGC 3 cut(s) 325, 360, 485
FspBI CTAG 2 cut(s) 38, 147
GlaI GCGC 1 cut(s) 475
GluI GCNGC 3 cut(s) 325, 360, 485
GsaI CCCAGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 5 cut(s) 167, 350, 705, 711, 831
HapII CCGG 7 cut(s) 563, 590, 717, 725, 843, 851, 968
HhaI GCGC 1 cut(s) 476
Hin1II CATG 3 cut(s) 71, 123, 287
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HpaII CCGG 7 cut(s) 563, 590, 717, 725, 843, 851, 968
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 4 cut(s) 109, 259, 332, 578
Hpy188I TCNGA 8 cut(s) 58, 626, 661, 752, 787, 878, 913, 1013
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 4 cut(s) 109, 259, 332, 578
HpyAV CCTTC 6 cut(s) 35, 70, 293, 439, 722, 959
HpyCH4III ACNGT 3 cut(s) 113, 341, 799
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 442
HpyF3I CTNAG 8 cut(s) 271, 412, 630, 681, 756, 807, 882, 933
Hsp92II CATG 3 cut(s) 71, 123, 287
HspAI GCGC 1 cut(s) 474
LmnI GCTCC 5 cut(s) 626, 752, 878, 1013, 1052
Lsp1109I GCAGC 3 cut(s) 336, 371, 471
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 2 cut(s) 38, 147
MaeIII GTNAC 2 cut(s) 458, 799
MhlI GDGCHC 5 cut(s) 631, 757, 883, 1018, 1057
MluCI AATT 6 cut(s) 294, 501, 525, 699, 825, 1029
MlyI GAGTC 9 cut(s) 525, 597, 659, 714, 785, 840, 911, 975, 993
MnlI CCTC 9 cut(s) 52, 64, 178, 361, 389, 505, 684, 810, 936
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 7 cut(s) 563, 590, 717, 725, 843, 851, 968
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 356, 442
NciI CCSGG 9 cut(s) 564, 591, 717, 725, 726, 843, 851, 852, 969
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 6 cut(s) 166, 695, 821, 947, 1015, 1054
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 2 cut(s) 123, 287
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 4 cut(s) 621, 747, 873, 1008
PkrI GCNGC 3 cut(s) 326, 361, 486
PleI GAGTC 9 cut(s) 525, 597, 658, 714, 784, 840, 910, 975, 993
PpsI GAGTC 9 cut(s) 525, 597, 658, 714, 784, 840, 910, 975, 993
PscI ACATGT 1 cut(s) 283
Psp124BI GAGCTC 3 cut(s) 631, 757, 883
PspFI CCCAGC 1 cut(s) 416
PspN4I GGNNCC 6 cut(s) 166, 695, 821, 947, 1015, 1054
PspPI GGNCC 2 cut(s) 165, 709
PvuII CAGCTG 1 cut(s) 416
RruI TCGCGA 1 cut(s) 140
SacI GAGCTC 3 cut(s) 631, 757, 883
SatI GCNGC 3 cut(s) 325, 360, 485
Sau96I GGNCC 2 cut(s) 165, 709
SchI GAGTC 9 cut(s) 525, 597, 659, 714, 785, 840, 911, 975, 993
SduI GDGCHC 5 cut(s) 631, 757, 883, 1018, 1057
SexAI ACCWGGT 1 cut(s) 553
SmaI CCCGGG 2 cut(s) 726, 852
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 6 cut(s) 294, 501, 525, 699, 825, 1029
SsiI CCGC 1 cut(s) 1018
SspMI CTAG 2 cut(s) 38, 147
SstI GAGCTC 3 cut(s) 631, 757, 883
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 113, 341, 799
TasI AATT 6 cut(s) 294, 501, 525, 699, 825, 1029
TfiI GAWTC 4 cut(s) 621, 747, 873, 1008
TscAI CASTG 2 cut(s) 334, 344
TseI GCWGC 3 cut(s) 324, 359, 484
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspMI CCCGGG 2 cut(s) 724, 850
TspRI CASTG 2 cut(s) 334, 344
XceI RCATGY 2 cut(s) 123, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmaI CCCGGG 2 cut(s) 724, 850
XmiI GTMKAC 2 cut(s) 108, 577
XspI CTAG 2 cut(s) 38, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.