Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001665

Physical Location & Seq

Genomic Coordinates Forward (+)

1108843 .. 1111088

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1014300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCTTGGTTTTTTACAGTTCTCTTTCTTGTTACTGCTCTTACATTTCATACTCCTTCAGAGGCTAGCCATGAGAAGAACGATCCTTCTGCAGTTGTTGTAGGCACTGTCTACTGTGACACATGTTTCCAAGAGGATTTCTCACATACCAGCCATTTCATTTCAGGGGCATCTGTTGGTGTGGAGTGCAAAGATGGGAGTTCAACAAAACCAAGTTTCAAGGCAGAAGTGAAAACAAATAGCCATGGACAAATCAAAGTCCAACTGCCCTTCTCAGTGAGTAAACATGTCAAGAAAATTGAAGGATGCTCCGTGAAACTAATCAGCAGCAGTGAACCCTACTGTGCTGTGGCATCATCAGCTACTTCATCTTCCCTACATCTCAAGGCAAGAAAGCAAGGGACCCACATATTCTCTGCTGGGTTCTTCACCTTCAAGCCTCCCAAGCAACCCAGCTTATGCAACCAGAAACCCAGCATTCAGAATTCCAAAAAATTAAATTCCCAGAAGTTCTCATTCCCTCCTACTGATGAGATGGCGTTCCCATCCCCCTCTCAGGTGGACCCCACAATGCCCGATCTCCCTCTCATCCCAAATGATCTCCCAGGACTCCCAGGACTACCAGGTCTCCCAGGTCTCCCAGGCCTCCCAGGCACAGGTCTTCCAGGCGTCCCAGGTACAGGTCTTCCAGGACTCCCAGGTCTCCCTGGACTCCCAGGCCTCCCAGGTCTCTCTGGACTCCCAGGCCTCCCAGGCCTCCCAGGTCTCCCAGGACTTCCTGGAACTCCAGGTTTGCCCCATGTTTGTGGAAAACCTTCATGTGGGTCCTGCAACTGCAAAACTTCAAAGAATGGGCAACTAGGTGATAATAAAGAAGTGACCAATCTAGATTCTCCACCAGCAGTTTCAGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

306

Amino Acids

31.54

Weight (kDa)

8.49

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	33 - 122	3.8e-20	Pollen protein Ole e 1 like
Collagen	PF01391	205 - 262	7.2e-07	Collagen triple helix repeat (20 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15780
fragaria_vesca	FvH4_6g46330 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340
malus_domestica	MD09G1074600.v1.1 MD09G1074800.v1.1 MD09G1075000.v1.1 MD09G1075400.v1.1 MD09G1075500.v1.1 MD16G1014300.v1.1 MD17G1066000.v1.1
prunus_persica	Prupe.3G248600_v2.0.a1 Prupe.3G248700_v2.0.a1
pyrus_communis	pycom09g00170 pycom09g00180 pycom09g00190 pycom09g00210 pycom09g00240 pycom09g00250 pycom17g06630
rosa_chinensis	RchiOBHm_Chr2g0164801 RchiOBHm_Chr2g0164841
rosa_laevigata	RLG00000021491 RLG00000021493
rosa_multiflora	Rmu_co8019616.1_g000001 Rmu_sc0000946.1_g000035 Rmu_sc0006207.1_g000006 Rmu_sc0022409.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086260 Rroxscaffold_2G00086280
rosa_rugosa	Rorug02G0510600 Rorug02G0510700 Rorug02G0510700 Rorug02G0510800 Rorug02G0510900 Rorug02G0510900
rosa_samantha	Rh2AG578700 Rh2AG579000 Rh2BG590000 Rh2BG590100 Rh2CG560600 Rh2CG560700 Rh2DG600200 Rh2DG600400
rosa_wichuraiana	Rw2G048050 Rw2G048060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	624, 699
AccI	GTMKAC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	484, 499
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	4 cut(s)	556, 656, 680, 821
AflIII	ACRYGT	2 cut(s)	122, 286
AgsI	TTSAA	5 cut(s)	204, 220, 302, 436, 846
AluBI	AGCT	2 cut(s)	362, 456
AluI	AGCT	2 cut(s)	362, 456
Alw26I	GTCTC	5 cut(s)	632, 641, 707, 734, 770
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	4 cut(s)	643, 718, 745, 754
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	2 cut(s)	484, 499
Asp700I	GAANNNNTTC	1 cut(s)	814
AspS9I	GGNCC	3 cut(s)	402, 562, 825
AsuHPI	GGTGA	2 cut(s)	421, 875
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	3 cut(s)	402, 562, 825
BbsI	GAAGAC	2 cut(s)	653, 677
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	3 cut(s)	188, 529, 553
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BcoDI	GTCTC	5 cut(s)	632, 641, 707, 734, 770
BfaI	CTAG	3 cut(s)	66, 860, 887
BfmI	CTRYAG	1 cut(s)	90
BglI	GCCNNNNNGGC	2 cut(s)	651, 753
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme18I	GGWCC	3 cut(s)	402, 562, 825
BmgT120I	GGNCC	3 cut(s)	402, 562, 825
BmiI	GGNNCC	4 cut(s)	403, 404, 564, 826
BmsI	GCATC	3 cut(s)	179, 296, 362
BmtI	GCTAGC	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	653, 677
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	669
BsaI	GGTCTC	5 cut(s)	632, 641, 707, 734, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	4 cut(s)	556, 656, 680, 821
BseGI	GGATG	3 cut(s)	311, 545, 588
BseLI	CCNNNNNNNGG	4 cut(s)	556, 656, 680, 821
BseMII	CTCAG	2 cut(s)	288, 569
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	3 cut(s)	419, 452, 473
BshFI	GGCC	4 cut(s)	645, 720, 747, 756
BslFI	GGGAC	2 cut(s)	415, 656
BslI	CCNNNNNNNGG	4 cut(s)	556, 656, 680, 821
BsmAI	GTCTC	5 cut(s)	632, 641, 707, 734, 770
BsmFI	GGGAC	2 cut(s)	415, 656
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	4 cut(s)	645, 720, 747, 756
Bso31I	GGTCTC	5 cut(s)	632, 641, 707, 734, 770
Bsp143I	GATC	3 cut(s)	82, 577, 598
Bsp19I	CCATGG	1 cut(s)	244
BspANI	GGCC	4 cut(s)	645, 720, 747, 756
BspCNI	CTCAG	2 cut(s)	287, 568
BspLI	GGNNCC	4 cut(s)	403, 404, 564, 826
BspMAI	CTGCAG	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	77
BspTNI	GGTCTC	5 cut(s)	632, 641, 707, 734, 770
BssMI	GATC	3 cut(s)	82, 577, 598
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	4 cut(s)	19, 109, 116, 344
BstACI	GRCGYC	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	274, 555
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	311, 545, 588
BstKTI	GATC	3 cut(s)	85, 580, 601
BstMAI	GTCTC	5 cut(s)	632, 641, 707, 734, 770
BstMBI	GATC	3 cut(s)	82, 577, 598
BstMWI	GCNNNNNNNGC	5 cut(s)	359, 445, 651, 753, 908
BstNSI	RCATGY	2 cut(s)	126, 290
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	339
BstV2I	GAAGAC	2 cut(s)	653, 677
BstXI	CCANNNNNNTGG	1 cut(s)	806
BsuRI	GGCC	4 cut(s)	645, 720, 747, 756
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	311, 545, 588
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	3 cut(s)	105, 282, 337
Cac8I	GCNNGC	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	402, 562, 825
CseI	GACGC	1 cut(s)	658
CsiI	ACCWGGT	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	678
CviAII	CATG	7 cut(s)	71, 123, 245, 287, 800, 819, 915
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	2 cut(s)	274, 555
DpnI	GATC	3 cut(s)	84, 579, 600
DpnII	GATC	3 cut(s)	82, 577, 598
DrdI	GACNNNNNNGTC	2 cut(s)	624, 699
DseDI	GACNNNNNNGTC	2 cut(s)	624, 699
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	4 cut(s)	645, 720, 747, 756
Eco31I	GGTCTC	5 cut(s)	632, 641, 707, 734, 770
Eco47I	GGWCC	3 cut(s)	402, 562, 825
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	2 cut(s)	402, 825
EcoRI	GAATTC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	7 cut(s)	74, 126, 248, 290, 803, 822, 918
FaqI	GGGAC	2 cut(s)	415, 656
FatI	CATG	7 cut(s)	70, 122, 244, 286, 799, 818, 914
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	3 cut(s)	318, 532, 575
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	3 cut(s)	66, 860, 887
GluI	GCNGC	1 cut(s)	328
GsaI	CCCAGC	3 cut(s)	423, 456, 477
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	4 cut(s)	645, 720, 747, 756
HgaI	GACGC	1 cut(s)	658
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	7 cut(s)	74, 126, 248, 290, 803, 822, 918
HinfI	GANTC	5 cut(s)	609, 693, 711, 738, 890
HphI	GGTGA	2 cut(s)	421, 875
Hpy166II	GTNNAC	4 cut(s)	112, 284, 335, 562
Hpy188I	TCNGA	2 cut(s)	61, 483
Hpy188III	TCNNGA	3 cut(s)	292, 735, 887
Hpy8I	GTNNAC	4 cut(s)	112, 284, 335, 562
HpyAV	CCTTC	6 cut(s)	66, 96, 280, 296, 442, 825
HpyCH4III	ACNGT	4 cut(s)	19, 109, 116, 344
HpyCH4V	TGCA	5 cut(s)	92, 189, 462, 831, 837
HpyF10VI	GCNNNNNNNGC	5 cut(s)	359, 445, 651, 753, 908
HpyF3I	CTNAG	2 cut(s)	274, 555
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	7 cut(s)	74, 126, 248, 290, 803, 822, 918
KflI	GGGWCCC	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	82, 577, 598
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	3 cut(s)	179, 296, 362
MabI	ACCWGGT	1 cut(s)	622
MaeI	CTAG	3 cut(s)	66, 860, 887
MaeIII	GTNAC	3 cut(s)	31, 116, 877
MalI	GATC	3 cut(s)	84, 579, 600
MboI	GATC	3 cut(s)	82, 577, 598
MboII	GAAGA	5 cut(s)	88, 363, 418, 653, 677
MluCI	AATT	4 cut(s)	297, 484, 494, 499
MlyI	GAGTC	4 cut(s)	603, 687, 705, 732
MmeI	TCCRAC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	814
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	5 cut(s)	359, 445, 651, 753, 908
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	82, 577, 598
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	7 cut(s)	74, 126, 248, 290, 803, 822, 918
NlaIV	GGNNCC	4 cut(s)	403, 404, 564, 826
NmuCI	GTSAC	2 cut(s)	116, 877
NspI	RCATGY	2 cut(s)	126, 290
PceI	AGGCCT	4 cut(s)	645, 720, 747, 756
PciI	ACATGT	2 cut(s)	122, 286
PctI	GAATGC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	1 cut(s)	890
PfoI	TCCNGGA	2 cut(s)	688, 778
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	4 cut(s)	603, 687, 705, 732
PpsI	GAGTC	4 cut(s)	603, 687, 705, 732
PpuMI	RGGWCCY	2 cut(s)	402, 825
PscI	ACATGT	2 cut(s)	122, 286
Psp5II	RGGWCCY	2 cut(s)	402, 825
PspFI	CCCAGC	3 cut(s)	419, 452, 473
PspN4I	GGNNCC	4 cut(s)	403, 404, 564, 826
PspPI	GGNCC	3 cut(s)	402, 562, 825
PspPPI	RGGWCCY	2 cut(s)	402, 825
PstI	CTGCAG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	3 cut(s)	82, 577, 598
Sau96I	GGNCC	3 cut(s)	402, 562, 825
SchI	GAGTC	4 cut(s)	603, 687, 705, 732
SexAI	ACCWGGT	1 cut(s)	622
SfaNI	GCATC	3 cut(s)	179, 296, 362
SfcI	CTRYAG	1 cut(s)	90
SfiI	GGCCNNNNNGGCC	1 cut(s)	753
SinI	GGWCC	3 cut(s)	402, 562, 825
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	297, 484, 494, 499
SseBI	AGGCCT	4 cut(s)	645, 720, 747, 756
SspMI	CTAG	3 cut(s)	66, 860, 887
StuI	AGGCCT	4 cut(s)	645, 720, 747, 756
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	4 cut(s)	19, 109, 116, 344
TasI	AATT	4 cut(s)	297, 484, 494, 499
TfiI	GAWTC	1 cut(s)	890
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	3 cut(s)	112, 282, 337
TseFI	GTSAC	2 cut(s)	116, 877
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	2 cut(s)	116, 877
TspDTI	ATGAA	4 cut(s)	38, 148, 357, 807
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	3 cut(s)	112, 282, 337
VpaK11BI	GGWCC	3 cut(s)	402, 562, 825
XapI	RAATTY	2 cut(s)	484, 499
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	2 cut(s)	126, 290
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	3 cut(s)	66, 860, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.