Rmu_sc0000946.1_g000035

Pollen Ole e 1 allergen and extensin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0001665
Physical Location & Seq
Reverse (-)
158891 .. 162715
3825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000035.1.cds

Sequence Viewer

Length: 1353 bp
atggtcgcggggtcgcgggggtttcgcggggtcgcaggcttgtcgcggaagagtttgcgggagtgtcgcgggcgtgggttcggtgtcgcggggatgtcgcgagggtgttgcagggatgccgcaaggatgctgcaggaatgtcgtggggccgagaggaaggtgcgaagatgccgcggggtcactggtgagtggcggtcgcgagggcaggcgagcgcgcgcgaaggtagaaggcaagcagggtttgccggcactacaagggcagcgaggctaacctgtttcacatttagtactccttcagaggctaaccatgagaagaagcttcaacctgctgtggttataggtaaagtttactgtgagacatgtttccaagatgggttctcaaaatccagccacttcatttcaggggcttctgttggtgtggagtgcaaagatcagacttcatcaaaacccagctttcaagcccaagtgaagacagataaccaaggagtgttcaaagtccaattgcctttctcagtgagcaaacatgtgaagaaaattgaagggtgttctgtgaagctgattcgcagcagcgaaccgtattgtgctgtggcctcagcagcagcttcatcttcacttcacctcaaatcaaggaagcaaggaactcacattttctcagctgggtttttcaccttcaagcccctaaaccaacccaacttatgtaaccaaaaaccaagcctcatccaaaacaacaagaaggaagttatcactaattccaagaaactctcattttctccaactgaggatttgacatttccctcaccagttcaagaacccagctttcctggtgttccttctctccctagacttccttatcttccaccactaccacaactccctcctctcccaggccttccaggactcccaggtcttccaggaatgggaattccaactttaccccccatcccaggaaaagtaacagagtcccattccaataccaaaactacaactacctcttcaaagacagagaggcacctaactgaagaagaaaaactagcccgcccagattttttcttcccaccgaaccctctcaatccaccatcaattttgcctccaaaccctctcaatccaccatcaattttgcctccaaaccctcttctgccaagcccacctccacttatcccaaacccatttcagcctccaccagcaccattgattccaaatttgccaccattgcctagcttgccaccactaccaagtttaactccaccgtctccaccaccaccatcattcccaacaatccctccattgcctccattcccattcccacctgtacctctcatccctggaatcccccctgcttcttcctctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

450

Amino Acids

48.25

Weight (kDa)

10.02

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 903
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 1008
AcsI RAATTY 2 cut(s) 921, 1198
AcuI CTGAAG 2 cut(s) 279, 1038
AfaI GTAC 2 cut(s) 289, 1311
AfiI CCNNNNNNNGG 3 cut(s) 884, 917, 944
AflIII ACRYGT 2 cut(s) 359, 523
AgsI TTSAA 7 cut(s) 323, 458, 493, 539, 673, 806, 996
AjnI CCWGG 7 cut(s) 820, 883, 892, 901, 910, 943, 1321
AluBI AGCT 7 cut(s) 319, 453, 556, 602, 656, 816, 1218
AluI AGCT 7 cut(s) 319, 453, 556, 602, 656, 816, 1218
Alw26I GTCTC 2 cut(s) 350, 1254
AoxI GGCC 3 cut(s) 147, 588, 886
ApeKI GCWGC 6 cut(s) 130, 260, 564, 567, 596, 599
ApoI RAATTY 2 cut(s) 921, 1198
AspLEI GCGC 3 cut(s) 215, 217, 219
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 4 cut(s) 197, 608, 658, 789
BanI GGYRCC 1 cut(s) 1008
BbsI GAAGAC 2 cut(s) 476, 899
BbvCI CCTCAGC 1 cut(s) 592
BbvI GCAGC 6 cut(s) 117, 272, 576, 579, 608, 611
BccI CCATC 5 cut(s) 365, 947, 1084, 1117, 1270
BcgI CGANNNNNNTGC 6 cut(s) 24, 58, 90, 122, 124, 156
BciT130I CCWGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
BcoDI GTCTC 2 cut(s) 350, 1254
BfaI CTAG 3 cut(s) 840, 1031, 1215
BfmI CTRYAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 8 cut(s) 120, 131, 172, 261, 565, 568, 597, 600
BlsI GCNGC 8 cut(s) 121, 132, 173, 262, 566, 569, 598, 601
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 148, 1010
BmrFI CCNGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
BmsI GCATC 3 cut(s) 106, 117, 158
BpiI GAAGAC 2 cut(s) 476, 899
Bpu10I CCTNAGC 1 cut(s) 592
BsaJI CCNNGG 6 cut(s) 172, 481, 883, 901, 943, 1321
BsaXI ACNNNNNCTCC 4 cut(s) 855, 885, 1264, 1294
Bsc4I CCNNNNNNNGG 3 cut(s) 884, 917, 944
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 187, 800
Bse3DI GCAATG 2 cut(s) 1208, 1283
BseBI CCWGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
BseDI CCNNGG 6 cut(s) 172, 481, 883, 901, 943, 1321
BseGI GGATG 6 cut(s) 99, 121, 132, 717, 939, 1317
BseLI CCNNNNNNNGG 3 cut(s) 884, 917, 944
BseMI GCAATG 2 cut(s) 1208, 1283
BseMII CTCAG 4 cut(s) 525, 606, 666, 768
BseNI ACTGG 2 cut(s) 187, 800
BsePI GCGCGC 2 cut(s) 213, 215
BseRI GAGGAG 1 cut(s) 867
BseXI GCAGC 6 cut(s) 117, 272, 576, 579, 608, 611
BseYI CCCAGC 3 cut(s) 449, 656, 812
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 3 cut(s) 149, 590, 888
BshNI GGYRCC 1 cut(s) 1008
BsiEI CGRYCG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 946
BslI CCNNNNNNNGG 3 cut(s) 884, 917, 944
BsmAI GTCTC 2 cut(s) 350, 1254
BsmBI CGTCTC 1 cut(s) 1254
BsmFI GGGAC 1 cut(s) 946
BsnI GGCC 3 cut(s) 149, 590, 888
Bsp143I GATC 1 cut(s) 430
Bsp68I TCGCGA 2 cut(s) 100, 199
BspANI GGCC 3 cut(s) 149, 590, 888
BspCNI CTCAG 4 cut(s) 524, 605, 665, 769
BspLI GGNNCC 2 cut(s) 148, 1010
BspMAI CTGCAG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 1008
BsrDI GCAATG 2 cut(s) 1208, 1283
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 187, 800
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 6 cut(s) 172, 481, 883, 901, 943, 1321
BssHII GCGCGC 2 cut(s) 213, 215
BssMI GATC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
Bst4CI ACNGT 3 cut(s) 353, 576, 1248
Bst6I CTCTTC 3 cut(s) 44, 997, 1137
BstAPI GCANNNNNTGC 1 cut(s) 242
BstDEI CTNAG 4 cut(s) 511, 592, 652, 777
BstDSI CCRYGG 1 cut(s) 172
BstENI CCTNNNNNAGG 1 cut(s) 882
BstF5I GGATG 6 cut(s) 99, 121, 132, 717, 939, 1317
BstHHI GCGC 3 cut(s) 215, 217, 219
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 350, 1254
BstMBI GATC 1 cut(s) 430
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 4 cut(s) 242, 596, 1210, 1219
BstNI CCWGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
BstNSI RCATGY 2 cut(s) 363, 527
BstSCI CCNGG 7 cut(s) 820, 883, 892, 901, 910, 943, 1321
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 6 cut(s) 117, 272, 576, 579, 608, 611
BstV2I GAAGAC 2 cut(s) 476, 899
BsuRI GGCC 3 cut(s) 149, 590, 888
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 6 cut(s) 99, 121, 132, 717, 939, 1317
BtsIMutI CAGTG 2 cut(s) 180, 519
BtuMI TCGCGA 2 cut(s) 100, 199
BveI ACCTGC 1 cut(s) 334
CfoI GCGC 3 cut(s) 215, 217, 219
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 147
Cfr42I CCGCGG 1 cut(s) 175
Csp6I GTAC 2 cut(s) 288, 1310
CviAII CATG 3 cut(s) 308, 360, 524
CviQI GTAC 2 cut(s) 288, 1310
DdeI CTNAG 4 cut(s) 511, 592, 652, 777
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
DrdI GACNNNNNNGTC 1 cut(s) 903
DseDI GACNNNNNNGTC 1 cut(s) 903
Eam1104I CTCTTC 3 cut(s) 44, 997, 1137
EarI CTCTTC 3 cut(s) 44, 997, 1137
Eco130I CCWWGG 1 cut(s) 481
Eco147I AGGCCT 1 cut(s) 888
Eco57I CTGAAG 2 cut(s) 279, 1038
EcoNI CCTNNNNNAGG 1 cut(s) 882
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 7 cut(s) 820, 883, 892, 901, 910, 943, 1321
EcoT14I CCWWGG 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 481
Esp3I CGTCTC 1 cut(s) 1254
FaeI CATG 3 cut(s) 311, 363, 527
FaiI YATR 5 cut(s) 309, 338, 361, 525, 697
FaqI GGGAC 1 cut(s) 946
FatI CATG 3 cut(s) 307, 359, 523
FauI CCCGC 7 cut(s) 9, 20, 51, 62, 82, 167, 1043
Fnu4HI GCNGC 8 cut(s) 120, 131, 172, 261, 565, 568, 597, 600
FokI GGATG 6 cut(s) 106, 128, 139, 704, 926, 1304
Fsp4HI GCNGC 8 cut(s) 120, 131, 172, 261, 565, 568, 597, 600
FspBI CTAG 3 cut(s) 840, 1031, 1215
GlaI GCGC 3 cut(s) 214, 216, 218
GluI GCNGC 8 cut(s) 120, 131, 172, 261, 565, 568, 597, 600
GsaI CCCAGC 3 cut(s) 453, 660, 816
HaeIII GGCC 3 cut(s) 149, 590, 888
HapII CCGG 1 cut(s) 246
HhaI GCGC 3 cut(s) 215, 217, 219
Hin1II CATG 3 cut(s) 311, 363, 527
Hin6I GCGC 3 cut(s) 213, 215, 217
HinP1I GCGC 3 cut(s) 213, 215, 217
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 5 cut(s) 559, 897, 959, 1192, 1326
HpaII CCGG 1 cut(s) 246
HphI GGTGA 4 cut(s) 197, 608, 658, 789
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 298, 435
Hpy188III TCNNGA 3 cut(s) 99, 198, 806
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 9 cut(s) 151, 215, 222, 303, 533, 679, 727, 840, 899
HpyCH4III ACNGT 3 cut(s) 353, 576, 1248
HpyCH4V TGCA 3 cut(s) 111, 133, 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 596, 1210, 1219
HpyF3I CTNAG 4 cut(s) 511, 592, 652, 777
Hsp92II CATG 3 cut(s) 311, 363, 527
HspAI GCGC 3 cut(s) 213, 215, 217
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 430
Lsp1109I GCAGC 6 cut(s) 117, 272, 576, 579, 608, 611
LweI GCATC 3 cut(s) 106, 117, 158
MaeI CTAG 3 cut(s) 840, 1031, 1215
MaeIII GTNAC 3 cut(s) 178, 698, 952
MalI GATC 1 cut(s) 432
MauBI CGCGCGCG 1 cut(s) 215
MboI GATC 1 cut(s) 430
MfeI CAATTG 1 cut(s) 500
MluCI AATT 7 cut(s) 500, 534, 748, 921, 1080, 1113, 1198
MlyI GAGTC 2 cut(s) 891, 968
MmeI TCCRAC 2 cut(s) 797, 950
MroNI GCCGGC 1 cut(s) 245
MseI TTAA 1 cut(s) 1238
MspA1I CMGCKG 2 cut(s) 174, 656
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
MunI CAATTG 1 cut(s) 500
MvaI CCWGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
MwoI GCNNNNNNNGC 4 cut(s) 242, 596, 1210, 1219
NaeI GCCGGC 1 cut(s) 247
NdeII GATC 1 cut(s) 430
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 311, 363, 527
NlaIV GGNNCC 2 cut(s) 148, 1010
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 178
NruI TCGCGA 2 cut(s) 100, 199
NspI RCATGY 2 cut(s) 363, 527
PauI GCGCGC 2 cut(s) 213, 215
PceI AGGCCT 1 cut(s) 888
PciI ACATGT 2 cut(s) 359, 523
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 559, 1192, 1326
PfoI TCCNGGA 2 cut(s) 892, 910
PkrI GCNGC 8 cut(s) 121, 132, 173, 262, 566, 569, 598, 601
PleI GAGTC 2 cut(s) 891, 967
PpsI GAGTC 2 cut(s) 891, 967
PscI ACATGT 2 cut(s) 359, 523
Psp6I CCWGG 7 cut(s) 820, 883, 892, 901, 910, 943, 1321
PspFI CCCAGC 3 cut(s) 449, 656, 812
PspGI CCWGG 7 cut(s) 820, 883, 892, 901, 910, 943, 1321
PspN4I GGNNCC 2 cut(s) 148, 1010
PspPI GGNCC 1 cut(s) 147
PstI CTGCAG 1 cut(s) 135
PteI GCGCGC 2 cut(s) 213, 215
PvuII CAGCTG 1 cut(s) 656
RruI TCGCGA 2 cut(s) 100, 199
RsaI GTAC 2 cut(s) 289, 1311
RsaNI GTAC 2 cut(s) 288, 1310
SacII CCGCGG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 1238
SatI GCNGC 8 cut(s) 120, 131, 172, 261, 565, 568, 597, 600
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 2 cut(s) 891, 968
ScrFI CCNGG 7 cut(s) 822, 885, 894, 903, 912, 945, 1323
SfaNI GCATC 3 cut(s) 106, 117, 158
SfcI CTRYAG 1 cut(s) 131
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
Sse9I AATT 7 cut(s) 500, 534, 748, 921, 1080, 1113, 1198
SseBI AGGCCT 1 cut(s) 888
SspMI CTAG 3 cut(s) 840, 1031, 1215
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 7 cut(s) 820, 883, 892, 901, 910, 943, 1321
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 3 cut(s) 353, 576, 1248
TasI AATT 7 cut(s) 500, 534, 748, 921, 1080, 1113, 1198
TatI WGTACW 1 cut(s) 287
TauI GCSGC 2 cut(s) 122, 174
TfiI GAWTC 3 cut(s) 559, 1192, 1326
Tru1I TTAA 1 cut(s) 1238
Tru9I TTAA 1 cut(s) 1238
TscAI CASTG 2 cut(s) 187, 519
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 6 cut(s) 130, 260, 564, 567, 596, 599
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 385, 429, 594
TspRI CASTG 2 cut(s) 187, 519
XagI CCTNNNNNAGG 1 cut(s) 882
XapI RAATTY 2 cut(s) 921, 1198
XceI RCATGY 2 cut(s) 363, 527
XspI CTAG 3 cut(s) 840, 1031, 1215
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.