Rorug02G0510800

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001665
Physical Location & Seq
Reverse (-)
64146247 .. 64146684
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0510800.1

Sequence Viewer

Length: 438 bp
ATGCCGGCAATAAGCCCCTATCACTTACTGGTAGGGCGAAGTGGGATTGGTCCCAGCATGCACCTTCAGTGTGCCTTAGCTGTCTTAGCGAGGCAGCGAGCTGTTTACATCAAATGGACGCAACCTCCTAGTGGCAGGATGAAATTGAGTGTCGCTAGATATATCTCCGTGCGGCAACATAGTGAGAAAGCTGTGATATTTGTAATGATGCTTCTTCGTTATAGACTAATCTTTCCGTTATGTCACCGCTTTGTTAAAGCAAATAGAGTACCCAATTGTGCACTCTTTGCTAATTGGTGCTTGTCAGAATACATAGCCTTAGTGGAGACTCCCGATGTTATTTCAAGATGTTCTCTTTATGTTTATGCTTATTGTAATCAGGGGTTCAGGCTCTACGTCCCTCCCTTGTATTCTGCAGTTTCATTAATCAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

145

Amino Acids

16.55

Weight (kDa)

9.89

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 172, 247
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 345
AluBI AGCT 3 cut(s) 80, 101, 191
AluI AGCT 3 cut(s) 80, 101, 191
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 320
Alw44I GTGCAC 1 cut(s) 279
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 94
AseI ATTAAT 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 129, 156
BfmI CTRYAG 1 cut(s) 414
BisI GCNGC 2 cut(s) 95, 173
BlsI GCNGC 2 cut(s) 96, 174
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 2 cut(s) 36, 383
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 2 cut(s) 36, 383
Bsp1286I GDGCHC 1 cut(s) 283
BspACI CCGC 2 cut(s) 172, 247
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 4
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 6, 59, 99
BstDEI CTNAG 3 cut(s) 76, 85, 319
BstF5I GGATG 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 86, 287
BstNSI RCATGY 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 3 cut(s) 6, 59, 99
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 269
CviAII CATG 1 cut(s) 58
CviJI RGCY 6 cut(s) 15, 80, 101, 191, 317, 391
CviKI_1 RGCY 6 cut(s) 15, 80, 101, 191, 317, 391
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 3 cut(s) 76, 85, 319
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 50
FaeI CATG 1 cut(s) 61
FaiI YATR 8 cut(s) 59, 162, 180, 222, 241, 314, 360, 366
FaqI GGGAC 2 cut(s) 36, 383
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 95, 173
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 95, 173
FspBI CTAG 2 cut(s) 129, 156
GluI GCNGC 2 cut(s) 95, 173
GsaI CCCAGC 1 cut(s) 57
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 106, 281
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 332, 345
Hpy8I GTNNAC 2 cut(s) 106, 281
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 61, 281, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 287
HpyF3I CTNAG 3 cut(s) 76, 85, 319
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 61
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
LpnPI CCDG 6 cut(s) 14, 18, 67, 121, 365, 373
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 129, 156
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 1 cut(s) 206
MfeI CAATTG 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 3 cut(s) 143, 274, 292
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 3 cut(s) 84, 135, 411
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 2 cut(s) 255, 425
MspI CCGG 1 cut(s) 5
MunI CAATTG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 86, 287
NaeI GCCGGC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 96, 174
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 418
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 255, 425
SatI GCNGC 2 cut(s) 95, 173
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 283
SetI ASST 7 cut(s) 66, 82, 103, 127, 193, 399, 435
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 50
SphI GCATGC 1 cut(s) 61
Sse9I AATT 3 cut(s) 143, 274, 292
SsiI CCGC 2 cut(s) 172, 247
SspMI CTAG 2 cut(s) 129, 156
TaiI ACGT 1 cut(s) 399
TasI AATT 3 cut(s) 143, 274, 292
TauI GCSGC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 255, 425
Tru9I TTAA 2 cut(s) 255, 425
TscAI CASTG 1 cut(s) 74
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 155, 411
TspGWI ACGGA 2 cut(s) 157, 225
TspRI CASTG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 50
VspI ATTAAT 1 cut(s) 425
XceI RCATGY 1 cut(s) 61
XspI CTAG 2 cut(s) 129, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.