Rw2G048060

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001665
Physical Location & Seq
Reverse (-)
75473850 .. 75475453
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048060.1

Sequence Viewer

Length: 1314 bp
ATGTCTTGGTTTCTAACCATATTCCTTCTCATTAGTCTAGCATTTATCACTCCTTCAGAGGGTAACCATGAGGAGAAGGTTCAATCTGCCGTTGTTATAGGCAAAGTATACTGTGATACATGCTTCCAAGACGGGTTCGCGAAAACTAGCCACTTCATTTCTGGGGCCTCTGTTGGTGTGGAGTGCAAAGATGAGAGTTCGTCGAAACCAAGTTTTCAAGCACAAGTGAAAACAGATAACCAAGGAGTGTTCAAAGTCCACTTGCCTTTCTCAGTAAGCAAACATGTGAAGGAAATTGAAGGGTGTTCTGTGAAGCTAATCAGCAGCAGTGAACCCCACTGTGCTGTGGCCTCAACAGCAGCCTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGAACACACATTTTCTCAGCTGGGTTTTTTGCCTTCAAGCCCCTAAAGCAAGGCAACCTATGTAACCAAAAATCAAGCTCCAACAAGCTGCCATTTTCCTCACCAATTCAACAACAAGACATATTGGGAATTGGACTTCCAGGTCTTCCAGGACTACCAGGTTTGCCCGGACTTCCAGGTCTACCTGGACTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGTAGAGAGGCACCTAATTGGCCTTGGTCTTCCGGGACTGCCTGGACTTCCAGGTCTTCCTGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCGGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCCCGCACAGAAAAAATTACAGAGAAAAATGATGATGGAGCCCAGGCCGTCCCACTTGCTTCTTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

437

Amino Acids

44.62

Weight (kDa)

8.43

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 3.7e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 7 cut(s) 537, 573, 591, 735, 897, 1050, 1212
AccB1I GGYRCC 4 cut(s) 693, 828, 990, 1143
AccI GTMKAC 2 cut(s) 108, 577
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 1243
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 6 cut(s) 59, 623, 758, 920, 1073, 1235
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 6 cut(s) 83, 218, 253, 299, 433, 506
AluBI AGCT 8 cut(s) 316, 416, 474, 484, 629, 764, 926, 1079
AluI AGCT 8 cut(s) 316, 416, 474, 484, 629, 764, 926, 1079
Alw21I GWGCWC 4 cut(s) 631, 766, 928, 1081
AoxI GGCC 4 cut(s) 165, 348, 703, 1284
ApeKI GCWGC 3 cut(s) 324, 359, 484
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 6 cut(s) 564, 591, 717, 852, 1014, 1167
AsuHPI GGTGA 1 cut(s) 489
BanI GGYRCC 4 cut(s) 693, 828, 990, 1143
BanII GRGCYC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
Bbv12I GWGCWC 4 cut(s) 631, 766, 928, 1081
BbvI GCAGC 3 cut(s) 336, 371, 471
BccI CCATC 1 cut(s) 1268
BceAI ACGGC 2 cut(s) 74, 1271
BcnI CCSGG 6 cut(s) 564, 591, 717, 852, 1014, 1167
BfaI CTAG 2 cut(s) 38, 147
BisI GCNGC 3 cut(s) 325, 360, 485
BlpI GCTNAGC 4 cut(s) 630, 765, 927, 1080
BlsI GCNGC 3 cut(s) 326, 361, 486
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 7 cut(s) 166, 695, 830, 992, 1145, 1240, 1279
Bpu1102I GCTNAGC 4 cut(s) 630, 765, 927, 1080
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 6 cut(s) 564, 591, 717, 852, 1014, 1167
BsaWI WCCGGW 1 cut(s) 781
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 623, 758, 920, 1073, 1235
BseLI CCNNNNNNNGG 6 cut(s) 59, 623, 758, 920, 1073, 1235
BseMII CTCAG 6 cut(s) 285, 426, 644, 779, 941, 1094
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 336, 371, 471
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 167, 350, 705, 1286
BshNI GGYRCC 4 cut(s) 693, 828, 990, 1143
BsiHKAI GWGCWC 4 cut(s) 631, 766, 928, 1081
BsiSI CCGG 7 cut(s) 564, 590, 716, 782, 851, 1013, 1166
BslFI GGGAC 2 cut(s) 732, 1274
BslI CCNNNNNNNGG 6 cut(s) 59, 623, 758, 920, 1073, 1235
BsmFI GGGAC 2 cut(s) 732, 1274
BsnI GGCC 4 cut(s) 167, 350, 705, 1286
Bsp1286I GDGCHC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
Bsp1720I GCTNAGC 4 cut(s) 630, 765, 927, 1080
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 1 cut(s) 1243
BspANI GGCC 4 cut(s) 167, 350, 705, 1286
BspCNI CTCAG 6 cut(s) 284, 425, 643, 778, 940, 1093
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 7 cut(s) 166, 695, 830, 992, 1145, 1240, 1279
BspT107I GGYRCC 4 cut(s) 693, 828, 990, 1143
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 241, 706
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 113, 341
BstC8I GCNNGC 1 cut(s) 1243
BstEII GGTNACC 1 cut(s) 62
BstFNI CGCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 356, 442
BstNSI RCATGY 2 cut(s) 123, 287
BstPI GGTNACC 1 cut(s) 62
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 336, 371, 471
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 167, 350, 705, 1286
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 337
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 1243
Cfr13I GGNCC 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 553
CviAII CATG 3 cut(s) 68, 120, 284
DrdI GACNNNNNNGTC 7 cut(s) 537, 573, 591, 735, 897, 1050, 1212
DseDI GACNNNNNNGTC 7 cut(s) 537, 573, 591, 735, 897, 1050, 1212
Ecl136II GAGCTC 4 cut(s) 629, 764, 926, 1079
Eco130I CCWWGG 2 cut(s) 241, 706
Eco24I GRGCYC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
Eco53kI GAGCTC 4 cut(s) 629, 764, 926, 1079
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 62
EcoICRI GAGCTC 4 cut(s) 629, 764, 926, 1079
EcoO109I RGGNCCY 1 cut(s) 165
EcoO65I GGTNACC 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 241, 706
EcoT38I GRGCYC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
ErhI CCWWGG 2 cut(s) 241, 706
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 8 cut(s) 20, 69, 98, 109, 121, 285, 457, 518
FaqI GGGAC 2 cut(s) 732, 1274
FatI CATG 3 cut(s) 67, 119, 283
FauI CCCGC 1 cut(s) 1250
FblI GTMKAC 2 cut(s) 108, 577
Fnu4HI GCNGC 3 cut(s) 325, 360, 485
FriOI GRGCYC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
Fsp4HI GCNGC 3 cut(s) 325, 360, 485
FspBI CTAG 2 cut(s) 38, 147
GluI GCNGC 3 cut(s) 325, 360, 485
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 4 cut(s) 167, 350, 705, 1286
HapII CCGG 7 cut(s) 564, 590, 716, 782, 851, 1013, 1166
Hin1II CATG 3 cut(s) 71, 123, 287
HpaII CCGG 7 cut(s) 564, 590, 716, 782, 851, 1013, 1166
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 4 cut(s) 109, 259, 332, 578
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 4 cut(s) 109, 259, 332, 578
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 6 cut(s) 35, 63, 70, 283, 293, 439
HpyCH4III ACNGT 2 cut(s) 113, 341
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 442
Hsp92II CATG 3 cut(s) 71, 123, 287
LmnI GCTCC 7 cut(s) 479, 626, 761, 923, 1076, 1238, 1277
Lsp1109I GCAGC 3 cut(s) 336, 371, 471
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 2 cut(s) 38, 147
MaeIII GTNAC 2 cut(s) 62, 458
MhlI GDGCHC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
MluCI AATT 5 cut(s) 294, 501, 525, 699, 1254
MmeI TCCRAC 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 7 cut(s) 564, 590, 716, 782, 851, 1013, 1166
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 356, 442
NciI CCSGG 6 cut(s) 564, 591, 717, 852, 1014, 1167
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 7 cut(s) 166, 695, 830, 992, 1145, 1240, 1279
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 2 cut(s) 123, 287
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 5 cut(s) 621, 756, 918, 1071, 1233
PkrI GCNGC 3 cut(s) 326, 361, 486
PscI ACATGT 1 cut(s) 283
Psp124BI GAGCTC 4 cut(s) 631, 766, 928, 1081
PspEI GGTNACC 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 416
PspN4I GGNNCC 7 cut(s) 166, 695, 830, 992, 1145, 1240, 1279
PspPI GGNCC 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 416
RruI TCGCGA 1 cut(s) 140
SacI GAGCTC 4 cut(s) 631, 766, 928, 1081
SatI GCNGC 3 cut(s) 325, 360, 485
Sau96I GGNCC 1 cut(s) 165
SduI GDGCHC 6 cut(s) 631, 766, 928, 1081, 1243, 1282
SexAI ACCWGGT 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 5 cut(s) 294, 501, 525, 699, 1254
SsiI CCGC 1 cut(s) 1243
SspMI CTAG 2 cut(s) 38, 147
SstI GAGCTC 4 cut(s) 631, 766, 928, 1081
StyI CCWWGG 2 cut(s) 241, 706
TaaI ACNGT 2 cut(s) 113, 341
TaqI TCGA 1 cut(s) 203
TasI AATT 5 cut(s) 294, 501, 525, 699, 1254
TfiI GAWTC 5 cut(s) 621, 756, 918, 1071, 1233
TscAI CASTG 2 cut(s) 334, 344
TseI GCWGC 3 cut(s) 324, 359, 484
TspDTI ATGAA 1 cut(s) 145
TspRI CASTG 2 cut(s) 334, 344
XceI RCATGY 2 cut(s) 123, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 108, 577
XspI CTAG 2 cut(s) 38, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.