pycom09g00190

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001665
Physical Location & Seq
Forward (+)
176820 .. 177182
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00190.1

Sequence Viewer

Length: 363 bp
ATGAAAACAAACAGCATTGGGCAATTCAAAGTCCATCTGCCCTTCTCGGTGAGCAAAGATGTCAAGAAAATTGAAGGATGCTCCGTGAAACTAATCCGCAGCAGTGAACCCTACTGTGCTGTGGCCTCATCAGCCACCTCATCTTCCCTATACCTCAAGGCAAGAAAGCAAGGGACTCACATATTCTCTGCTGGTTTCTTCACCTTCAAGCCTCTCAAGCAACCCAGCTTATGCAACCAGAAACCCAACATTCAGAATTCCAAGAAATTAAATTCCCAGAAGTTCTCAGAGATGGCATTCCCATCATCCTCTCAGGTGGACCCCAAAATGACTGATCCCTCTCTCAACCAATCGATCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

121

Amino Acids

13.21

Weight (kDa)

9.88

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 2 - 46 4e-07 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 256, 271
AgsI TTSAA 3 cut(s) 28, 74, 208
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 2 cut(s) 256, 271
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 61, 193
AvaII GGWCC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 111
BccI CCATC 3 cut(s) 42, 286, 310
BfaI CTAG 1 cut(s) 361
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 140, 200
Bsa29I ATCGAT 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 353
BseGI GGATG 2 cut(s) 83, 305
BseMII CTCAG 2 cut(s) 300, 326
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 353
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 334, 354
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 299, 325
BspDI ATCGAT 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 329
BssMI GATC 2 cut(s) 334, 354
Bst4CI ACNGT 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 286, 312
BstF5I GGATG 2 cut(s) 83, 305
BstKTI GATC 2 cut(s) 337, 357
BstMBI GATC 2 cut(s) 334, 354
BstMWI GCNNNNNNNGC 2 cut(s) 131, 217
BstV1I GCAGC 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 353
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 2 cut(s) 83, 305
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 353
CviJI RGCY 4 cut(s) 125, 134, 211, 228
CviKI_1 RGCY 4 cut(s) 125, 134, 211, 228
DdeI CTNAG 2 cut(s) 286, 312
DpnI GATC 2 cut(s) 336, 356
DpnII GATC 2 cut(s) 334, 354
Eco47I GGWCC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 256
FaiI YATR 3 cut(s) 151, 182, 232
FaqI GGGAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 2 cut(s) 90, 292
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 1 cut(s) 361
GluI GCNGC 1 cut(s) 100
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 125
HinfI GANTC 1 cut(s) 175
HphI GGTGA 2 cut(s) 61, 193
Hpy166II GTNNAC 2 cut(s) 107, 319
Hpy188I TCNGA 2 cut(s) 255, 289
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 107, 319
HpyAV CCTTC 3 cut(s) 52, 68, 214
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 217
HpyF3I CTNAG 2 cut(s) 286, 312
Kzo9I GATC 2 cut(s) 334, 354
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 5 cut(s) 177, 238, 251, 290, 299
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 361
MalI GATC 2 cut(s) 336, 356
MboI GATC 2 cut(s) 334, 354
MboII GAAGA 2 cut(s) 135, 190
MluCI AATT 5 cut(s) 23, 69, 256, 266, 271
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 6 cut(s) 136, 148, 164, 222, 319, 349
MseI TTAA 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 131, 217
NdeII GATC 2 cut(s) 334, 354
NlaIV GGNNCC 1 cut(s) 321
PctI GAATGC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 334, 354
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 169
SetI ASST 5 cut(s) 140, 156, 206, 230, 318
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 319
SmlI CTYRAG 2 cut(s) 155, 215
SmoI CTYRAG 2 cut(s) 155, 215
Sse9I AATT 5 cut(s) 23, 69, 256, 266, 271
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 353
TasI AATT 5 cut(s) 23, 69, 256, 266, 271
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 2 cut(s) 256, 271
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.