Rh2DG600400

Pollen proteins Ole e I like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
83266951 .. 83268562
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG600400.1

Sequence Viewer

Length: 1134 bp
ATGTCTTGGTTTCTAACCATATTCCTTCTCATTAGTCTAGCATTTATCACTCCTTCAGAGGCTAACCATGAGGAGAAGGTTCAATCTGCCGTTGTTATAGGCAAAGTATACTGTGATACATGCTTCCAAGACGGGTTCGCGAAAACTAGCCACTTCATTTCTGGGGCCTCTGTTGGTGTGGAGTGCAAAGATGAGAGTTCATCGAAACCAAGTTTTCAAGCACAAGTGAAAACAGATAACCAAGGAGTGTTCAAAGTCCACTTGCCTTTCTCAGTAAGCAAACATGTGAAGGAAATTGAAGGGTGTTCTGTGAAGCTAATCAGCAGCAGTGAACCCCACTGTGCTGTGGCCTCAACAGCAGCTTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGAACACACATTTTCTCAGCTGGGTTTTTCGCCTTCAAGCCCCTAAAGCAAGGCAACCTATGTAACCAAAAATCAAGCTCCAACAAGCCGCCATTTTCCTCACCAATTCAACAACAAGACATATTGGGAATTGGACTCCCAGGTCTTCCAGGACTACCAGGTTTGCCGGGACTTCCAGGTCTACCTGGACTTCCGGGTCTTCCAGGACTCCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGTAGAGAGGCACCTAATTGGCCTGGGTCTTCCGGGACTGCCTGGACTTCCAGGTCTTCCTGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATATCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCCCGCACAGAAAAAATTACAGAGAAAAATGATGATGGAGCCCAGGCCGTCCCACTTGCTTCTTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

377

Amino Acids

38.75

Weight (kDa)

8.45

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 2.8e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 6 cut(s) 537, 573, 591, 726, 879, 1032
AccB1I GGYRCC 3 cut(s) 684, 819, 972
AccI GTMKAC 2 cut(s) 108, 577
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 485, 1063
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 4 cut(s) 614, 749, 902, 1055
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 6 cut(s) 83, 218, 253, 299, 433, 506
AluBI AGCT 7 cut(s) 316, 362, 416, 474, 620, 755, 908
AluI AGCT 7 cut(s) 316, 362, 416, 474, 620, 755, 908
Alw21I GWGCWC 3 cut(s) 622, 757, 910
AoxI GGCC 4 cut(s) 165, 348, 694, 1104
ApeKI GCWGC 2 cut(s) 324, 359
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 5 cut(s) 564, 591, 708, 843, 996
AsuHPI GGTGA 1 cut(s) 489
BanI GGYRCC 3 cut(s) 684, 819, 972
BanII GRGCYC 5 cut(s) 622, 757, 910, 1063, 1102
Bbv12I GWGCWC 3 cut(s) 622, 757, 910
BbvI GCAGC 2 cut(s) 336, 371
BccI CCATC 1 cut(s) 1088
BceAI ACGGC 2 cut(s) 74, 1091
BcnI CCSGG 5 cut(s) 564, 591, 708, 843, 996
BfaI CTAG 2 cut(s) 38, 147
BisI GCNGC 3 cut(s) 325, 360, 485
BlpI GCTNAGC 3 cut(s) 621, 756, 909
BlsI GCNGC 3 cut(s) 326, 361, 486
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 6 cut(s) 166, 686, 821, 974, 1060, 1099
Bpu1102I GCTNAGC 3 cut(s) 621, 756, 909
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 5 cut(s) 564, 591, 708, 843, 996
Bsc4I CCNNNNNNNGG 4 cut(s) 614, 749, 902, 1055
BseLI CCNNNNNNNGG 4 cut(s) 614, 749, 902, 1055
BseMII CTCAG 5 cut(s) 285, 426, 635, 770, 923
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 336, 371
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 167, 350, 696, 1106
BshNI GGYRCC 3 cut(s) 684, 819, 972
BsiHKAI GWGCWC 3 cut(s) 622, 757, 910
BsiSI CCGG 5 cut(s) 563, 590, 707, 842, 995
BslFI GGGAC 3 cut(s) 579, 723, 1094
BslI CCNNNNNNNGG 4 cut(s) 614, 749, 902, 1055
BsmFI GGGAC 3 cut(s) 579, 723, 1094
BsnI GGCC 4 cut(s) 167, 350, 696, 1106
Bsp1286I GDGCHC 5 cut(s) 622, 757, 910, 1063, 1102
Bsp1720I GCTNAGC 3 cut(s) 621, 756, 909
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 2 cut(s) 485, 1063
BspANI GGCC 4 cut(s) 167, 350, 696, 1106
BspCNI CTCAG 5 cut(s) 284, 425, 634, 769, 922
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 6 cut(s) 166, 686, 821, 974, 1060, 1099
BspT107I GGYRCC 3 cut(s) 684, 819, 972
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 113, 341
BstC8I GCNNGC 1 cut(s) 1063
BstDEI CTNAG 8 cut(s) 271, 412, 621, 672, 756, 807, 909, 960
BstFNI CGCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 356, 442
BstNSI RCATGY 2 cut(s) 123, 287
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 336, 371
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 167, 350, 696, 1106
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 337
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 1063
Cfr13I GGNCC 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 553
CviAII CATG 3 cut(s) 68, 120, 284
DdeI CTNAG 8 cut(s) 271, 412, 621, 672, 756, 807, 909, 960
DrdI GACNNNNNNGTC 6 cut(s) 537, 573, 591, 726, 879, 1032
DseDI GACNNNNNNGTC 6 cut(s) 537, 573, 591, 726, 879, 1032
Ecl136II GAGCTC 3 cut(s) 620, 755, 908
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 5 cut(s) 622, 757, 910, 1063, 1102
Eco53kI GAGCTC 3 cut(s) 620, 755, 908
Eco57I CTGAAG 1 cut(s) 39
EcoICRI GAGCTC 3 cut(s) 620, 755, 908
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 5 cut(s) 622, 757, 910, 1063, 1102
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 8 cut(s) 20, 69, 98, 109, 121, 285, 457, 518
FaqI GGGAC 3 cut(s) 579, 723, 1094
FatI CATG 3 cut(s) 67, 119, 283
FauI CCCGC 1 cut(s) 1070
FblI GTMKAC 2 cut(s) 108, 577
Fnu4HI GCNGC 3 cut(s) 325, 360, 485
FriOI GRGCYC 5 cut(s) 622, 757, 910, 1063, 1102
Fsp4HI GCNGC 3 cut(s) 325, 360, 485
FspBI CTAG 2 cut(s) 38, 147
GluI GCNGC 3 cut(s) 325, 360, 485
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 4 cut(s) 167, 350, 696, 1106
HapII CCGG 5 cut(s) 563, 590, 707, 842, 995
Hin1II CATG 3 cut(s) 71, 123, 287
HpaII CCGG 5 cut(s) 563, 590, 707, 842, 995
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 4 cut(s) 109, 259, 332, 578
Hpy188I TCNGA 9 cut(s) 58, 617, 652, 752, 787, 905, 928, 940, 1058
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 4 cut(s) 109, 259, 332, 578
HpyAV CCTTC 6 cut(s) 35, 63, 70, 283, 293, 439
HpyCH4III ACNGT 2 cut(s) 113, 341
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 442
HpyF3I CTNAG 8 cut(s) 271, 412, 621, 672, 756, 807, 909, 960
Hsp92II CATG 3 cut(s) 71, 123, 287
LmnI GCTCC 6 cut(s) 479, 617, 752, 905, 1058, 1097
Lsp1109I GCAGC 2 cut(s) 336, 371
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 2 cut(s) 38, 147
MaeIII GTNAC 1 cut(s) 458
MhlI GDGCHC 5 cut(s) 622, 757, 910, 1063, 1102
MluCI AATT 5 cut(s) 294, 501, 525, 690, 1074
MlyI GAGTC 9 cut(s) 525, 597, 650, 785, 849, 867, 938, 1002, 1020
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 9 cut(s) 52, 64, 178, 361, 389, 505, 675, 810, 963
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 5 cut(s) 563, 590, 707, 842, 995
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 356, 442
NciI CCSGG 5 cut(s) 564, 591, 708, 843, 996
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 6 cut(s) 166, 686, 821, 974, 1060, 1099
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 2 cut(s) 123, 287
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 4 cut(s) 612, 747, 900, 1053
PkrI GCNGC 3 cut(s) 326, 361, 486
PleI GAGTC 9 cut(s) 525, 597, 649, 784, 849, 867, 937, 1002, 1020
PpsI GAGTC 9 cut(s) 525, 597, 649, 784, 849, 867, 937, 1002, 1020
PscI ACATGT 1 cut(s) 283
Psp124BI GAGCTC 3 cut(s) 622, 757, 910
PspFI CCCAGC 1 cut(s) 416
PspN4I GGNNCC 6 cut(s) 166, 686, 821, 974, 1060, 1099
PspPI GGNCC 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 416
RruI TCGCGA 1 cut(s) 140
SacI GAGCTC 3 cut(s) 622, 757, 910
SatI GCNGC 3 cut(s) 325, 360, 485
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 9 cut(s) 525, 597, 650, 785, 849, 867, 938, 1002, 1020
SduI GDGCHC 5 cut(s) 622, 757, 910, 1063, 1102
SexAI ACCWGGT 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 5 cut(s) 294, 501, 525, 690, 1074
SsiI CCGC 2 cut(s) 485, 1063
SspMI CTAG 2 cut(s) 38, 147
SstI GAGCTC 3 cut(s) 622, 757, 910
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 113, 341
TaqI TCGA 1 cut(s) 203
TasI AATT 5 cut(s) 294, 501, 525, 690, 1074
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 4 cut(s) 612, 747, 900, 1053
TscAI CASTG 2 cut(s) 334, 344
TseI GCWGC 2 cut(s) 324, 359
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspRI CASTG 2 cut(s) 334, 344
XceI RCATGY 2 cut(s) 123, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 108, 577
XspI CTAG 2 cut(s) 38, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.