FvH4_6g46330

Pollen Ole e 1 allergen and extensin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001665
Physical Location & Seq
Reverse (-)
35375777 .. 35377358
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46330.t1

Sequence Viewer

Length: 1077 bp
ATGTCTTGGTTTCTAACCATATTCTTCCTCATTAGTCTCACATTAAGTACTCCTTCAGAGGCTAGCCAGGAGAAGAAGCTTCAACCTGCTGTGGTTATAGGCAAAGTTTACTGTGAGACATGTTTCCAAGATGGGATCTCAAAATCCAGCCACTTCATTTCAGGGGCTTCTGTTGGTGTGGAATGCAAAGATGTGACTTCATCAAAACCAAGCTTTCAAGCACAAGTGAAGACAGATAACCAAGGAGTGTTCAAAGTCCAATTGCCTTTCTCAGTCAGCAAACATGTCAAGAAAATTGAAGGCTGTTCCGTGAAGCTAATTCGCAGCAGCGAACCGTATTGTGCTGTCGCCTCAGCAGCAGCTTCATCTTCACTTCACCTCACGTCAAGGAAGCAAGGCACTCACATTTTCTCAGCTGGGTTTTTCACCTTTAAACCTCTAAAGCAGCCCAACCTATGCAACCAAAAACCAAGCCTCATCCGAAACACCAAGGAAGTTACCACTAATTCAGAGAAACTCTCATTATTTTCTCCAACTGAGGAACTGGCATTTCCCTCACCAGTTCAAGAATCCGACTTTGGTGATTCTATCCGTAATCTGATCCCTTTTCTTCCACCACTACCACCACTGCCTCCTCTCCCAAGCCTTCCAGGACTCCCAGGTCTTCCAGGACTTCCCCCAACCTCAGCAAAACAAACAAATCCCAATTCCAAAACTACTAGTACTACCTCTTCAAAGACAGAGAGACACCTTAGTGACTTGACTGAAAAAGAAAAATTATCCCAACCAGATTTTTTCTTCCCACCAAACCCTCTCAATCCACCATCACTTTTGCCTCCAAACCCTCTTCTGCCAAGCCCACCTCCACTCATCCCAAACCCATTCCAGCCTCCACCAGCACCATTGATTCCAAGTTTACCCCCATTACCAGGTTTGACTCCACCATCTCCACCACCACCATCATTCCCAACAATCCCTCCATTACCTCCATTCCCAACAATCCCTCCATTACCTGCATTCCCATTACCACCTGTACCTCTCATCCCTGGAATGCCTCCCGCTTCTTCCTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

359

Amino Acids

38.3

Weight (kDa)

9.09

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 2.3e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 660
Acc36I ACCTGC 2 cut(s) 94, 1021
AciI CCGC 1 cut(s) 1059
AclWI GGATC 2 cut(s) 143, 595
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 3 cut(s) 49, 724, 1035
AfiI CCNNNNNNNGG 1 cut(s) 929
AflIII ACRYGT 2 cut(s) 119, 283
AgsI TTSAA 6 cut(s) 83, 218, 253, 299, 566, 735
AhlI ACTAGT 1 cut(s) 719
AjiI CACGTC 1 cut(s) 384
AjnI CCWGG 6 cut(s) 66, 649, 658, 667, 928, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AleI CACNNNNGTG 1 cut(s) 753
AluBI AGCT 5 cut(s) 79, 213, 316, 362, 416
AluI AGCT 5 cut(s) 79, 213, 316, 362, 416
Alw26I GTCTC 3 cut(s) 41, 110, 739
AlwI GGATC 2 cut(s) 143, 595
ApeKI GCWGC 5 cut(s) 324, 327, 356, 359, 445
AsuHPI GGTGA 4 cut(s) 368, 418, 549, 593
AsuNHI GCTAGC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 715, 747
BbsI GAAGAC 2 cut(s) 236, 656
BbvCI CCTCAGC 2 cut(s) 352, 685
BbvI GCAGC 5 cut(s) 336, 339, 368, 371, 457
BccI CCATC 4 cut(s) 125, 832, 952, 967
BciT130I CCWGG 6 cut(s) 68, 651, 660, 669, 930, 1047
BcoDI GTCTC 3 cut(s) 41, 110, 739
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 2 cut(s) 63, 720
BfuAI ACCTGC 2 cut(s) 94, 1021
BisI GCNGC 5 cut(s) 325, 328, 357, 360, 446
BlsI GCNGC 5 cut(s) 326, 329, 358, 361, 447
BmcAI AGTACT 2 cut(s) 49, 724
Bme1390I CCNGG 6 cut(s) 68, 651, 660, 669, 930, 1047
BmgBI CACGTC 1 cut(s) 384
BmrFI CCNGG 6 cut(s) 68, 651, 660, 669, 930, 1047
BmtI GCTAGC 1 cut(s) 66
BpiI GAAGAC 2 cut(s) 236, 656
BplI GAGNNNNNCTC 2 cut(s) 503, 535
Bpu10I CCTNAGC 2 cut(s) 352, 685
BsaJI CCNNGG 4 cut(s) 241, 489, 658, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 961, 988, 991, 1018
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse1I ACTGG 2 cut(s) 549, 560
BseBI CCWGG 6 cut(s) 68, 651, 660, 669, 930, 1047
BseDI CCNNGG 4 cut(s) 241, 489, 658, 1045
BseGI GGATG 3 cut(s) 477, 870, 1041
BseLI CCNNNNNNNGG 1 cut(s) 929
BseMII CTCAG 5 cut(s) 285, 366, 426, 528, 699
BseNI ACTGG 2 cut(s) 549, 560
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 5 cut(s) 336, 339, 368, 371, 457
BseYI CCCAGC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 3 cut(s) 41, 110, 739
BsmI GAATGC 3 cut(s) 188, 1016, 1056
Bsp143I GATC 2 cut(s) 135, 600
BspACI CCGC 1 cut(s) 1059
BspCNI CTCAG 5 cut(s) 284, 365, 425, 529, 698
BspMI ACCTGC 2 cut(s) 94, 1021
BspOI GCTAGC 1 cut(s) 66
BspPI GGATC 2 cut(s) 143, 595
BsrI ACTGG 2 cut(s) 549, 560
BssECI CCNNGG 4 cut(s) 241, 489, 658, 1045
BssMI GATC 2 cut(s) 135, 600
BssT1I CCWWGG 2 cut(s) 241, 489
Bst2UI CCWGG 6 cut(s) 68, 651, 660, 669, 930, 1047
Bst4CI ACNGT 2 cut(s) 113, 336
Bst6I CTCTTC 2 cut(s) 736, 852
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 6 cut(s) 271, 352, 412, 537, 685, 752
BstF5I GGATG 3 cut(s) 477, 870, 1041
BstKTI GATC 2 cut(s) 138, 603
BstMAI GTCTC 3 cut(s) 41, 110, 739
BstMBI GATC 2 cut(s) 135, 600
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 6 cut(s) 68, 651, 660, 669, 930, 1047
BstNSI RCATGY 2 cut(s) 123, 287
BstSCI CCNGG 6 cut(s) 66, 649, 658, 667, 928, 1045
BstV1I GCAGC 5 cut(s) 336, 339, 368, 371, 457
BstV2I GAAGAC 2 cut(s) 236, 656
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 3 cut(s) 477, 870, 1041
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 1 cut(s) 626
BveI ACCTGC 2 cut(s) 94, 1021
Cac8I GCNNGC 1 cut(s) 64
CsiI ACCWGGT 1 cut(s) 928
Csp6I GTAC 3 cut(s) 48, 723, 1034
CviAII CATG 2 cut(s) 120, 284
CviQI GTAC 3 cut(s) 48, 723, 1034
DdeI CTNAG 6 cut(s) 271, 352, 412, 537, 685, 752
DpnI GATC 2 cut(s) 137, 602
DpnII GATC 2 cut(s) 135, 600
DraI TTTAAA 1 cut(s) 433
DrdI GACNNNNNNGTC 1 cut(s) 660
DseDI GACNNNNNNGTC 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 736, 852
EarI CTCTTC 2 cut(s) 736, 852
Eco130I CCWWGG 2 cut(s) 241, 489
Eco57I CTGAAG 1 cut(s) 39
EcoRII CCWGG 6 cut(s) 66, 649, 658, 667, 928, 1045
EcoT14I CCWWGG 2 cut(s) 241, 489
ErhI CCWWGG 2 cut(s) 241, 489
FaeI CATG 2 cut(s) 123, 287
FaiI YATR 5 cut(s) 20, 98, 121, 285, 457
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 2 cut(s) 119, 283
FauI CCCGC 1 cut(s) 1066
Fnu4HI GCNGC 5 cut(s) 325, 328, 357, 360, 446
FokI GGATG 3 cut(s) 464, 857, 1028
Fsp4HI GCNGC 5 cut(s) 325, 328, 357, 360, 446
FspBI CTAG 2 cut(s) 63, 720
GluI GCNGC 5 cut(s) 325, 328, 357, 360, 446
GsaI CCCAGC 1 cut(s) 420
Hin1II CATG 2 cut(s) 123, 287
HindIII AAGCTT 2 cut(s) 77, 211
HinfI GANTC 5 cut(s) 569, 584, 654, 907, 937
HphI GGTGA 4 cut(s) 368, 418, 549, 593
Hpy166II GTNNAC 2 cut(s) 109, 917
Hpy188I TCNGA 5 cut(s) 58, 482, 511, 574, 600
Hpy188III TCNNGA 2 cut(s) 289, 566
Hpy8I GTNNAC 2 cut(s) 109, 917
HpyAV CCTTC 3 cut(s) 63, 293, 656
HpyCH4III ACNGT 2 cut(s) 113, 336
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 3 cut(s) 186, 459, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 6 cut(s) 271, 352, 412, 537, 685, 752
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 2 cut(s) 123, 287
Kzo9I GATC 2 cut(s) 135, 600
Lsp1109I GCAGC 5 cut(s) 336, 339, 368, 371, 457
MabI ACCWGGT 1 cut(s) 928
MaeI CTAG 2 cut(s) 63, 720
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 3 cut(s) 193, 496, 755
MalI GATC 2 cut(s) 137, 602
MboI GATC 2 cut(s) 135, 600
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 135
MluCI AATT 6 cut(s) 260, 294, 318, 505, 706, 776
MlyI GAGTC 2 cut(s) 648, 931
MmeI TCCRAC 2 cut(s) 557, 597
MseI TTAA 2 cut(s) 44, 432
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 6 cut(s) 68, 651, 660, 669, 930, 1047
MunI CAATTG 1 cut(s) 260
Mva1269I GAATGC 3 cut(s) 188, 1016, 1056
MvaI CCWGG 6 cut(s) 68, 651, 660, 669, 930, 1047
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 2 cut(s) 135, 600
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 123, 287
NmuCI GTSAC 2 cut(s) 193, 755
NspI RCATGY 2 cut(s) 123, 287
OliI CACNNNNGTG 1 cut(s) 753
PciI ACATGT 2 cut(s) 119, 283
PctI GAATGC 3 cut(s) 188, 1016, 1056
PfeI GAWTC 3 cut(s) 569, 584, 907
PfoI TCCNGGA 2 cut(s) 649, 667
PkrI GCNGC 5 cut(s) 326, 329, 358, 361, 447
PleI GAGTC 2 cut(s) 648, 931
PpsI GAGTC 2 cut(s) 648, 931
PscI ACATGT 2 cut(s) 119, 283
Psp6I CCWGG 6 cut(s) 66, 649, 658, 667, 928, 1045
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 6 cut(s) 66, 649, 658, 667, 928, 1045
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 49, 724, 1035
RsaNI GTAC 3 cut(s) 48, 723, 1034
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 2 cut(s) 44, 432
SatI GCNGC 5 cut(s) 325, 328, 357, 360, 446
Sau3AI GATC 2 cut(s) 135, 600
ScaI AGTACT 2 cut(s) 49, 724
SchI GAGTC 2 cut(s) 648, 931
ScrFI CCNGG 6 cut(s) 68, 651, 660, 669, 930, 1047
SexAI ACCWGGT 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 753
SpeI ACTAGT 1 cut(s) 719
Sse9I AATT 6 cut(s) 260, 294, 318, 505, 706, 776
SsiI CCGC 1 cut(s) 1059
SspMI CTAG 2 cut(s) 63, 720
StyD4I CCNGG 6 cut(s) 66, 649, 658, 667, 928, 1045
StyI CCWWGG 2 cut(s) 241, 489
TaaI ACNGT 2 cut(s) 113, 336
TaiI ACGT 1 cut(s) 386
TasI AATT 6 cut(s) 260, 294, 318, 505, 706, 776
TatI WGTACW 2 cut(s) 47, 722
TfiI GAWTC 3 cut(s) 569, 584, 907
Tru1I TTAA 2 cut(s) 44, 432
Tru9I TTAA 2 cut(s) 44, 432
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 2 cut(s) 193, 755
TseI GCWGC 5 cut(s) 324, 327, 356, 359, 445
Tsp45I GTSAC 2 cut(s) 193, 755
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspGWI ACGGA 2 cut(s) 298, 581
TspRI CASTG 1 cut(s) 633
XceI RCATGY 2 cut(s) 123, 287
XspI CTAG 2 cut(s) 63, 720
ZrmI AGTACT 2 cut(s) 49, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.