Rorug02G0510900

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001665
Physical Location & Seq
Forward (+)
64169801 .. 64173614
3814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0510900.1

Sequence Viewer

Length: 684 bp
ATGGGTGGAGGACAGAAGAGTGACAAAGAAAAAGTGGAGGAAGAAGATACTGATAATGAAGCAGGAGAGGGACTTCCCAGGCAGATGAGTGAGACTTCTGTTTCTGCAGCTGAGGATGATGATGATGAAGAAAACAGCAACAAGATTCAGTTGGGTCCTCAATGCACTCTCAAAGAACAGATTGAGAAGGATAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAACAACTTCTTGGGGCCGTGGATTTTGAGAGTGTTGGAGAAACTCTAGACCCAGAAGTAAAGATTATTAGCCTCTCAATCCTCACTCCTGATAGACCTGACATTGTTCTTGATGTTCCGGACAATGGAAAACCCAAAGGCTTGTGGTTTACTCTGAAGGAAGGTAGTCCTCACAACTTGAAATTCTCCTTCCGAGTTAGCAATAACATTGTATCTGGCCTCAAGTACACCAATACTGTTTGGAAAACCGGCGTCAAGGTGGACAGCACAAAAGAGATGATTGGAACCTTCAGTCCTCAGCCAGAGCCATACACACATGTGATGCCAGAAGTGGTCACACCTTCCGGCATGTTTGCAAGAGGATCATATTCTGCAAGATCAAAGTTTCTCGACGATGATAACAAGTGCTACTTGGAAATCAATTACACCTTTGATATTCGAAAGGAATGGGCTGCGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

227

Amino Acids

25.48

Weight (kDa)

4.61

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_GDI PF02115 37 - 223 9.7e-86 RHO protein GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 340
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 2 cut(s) 398, 496
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 1 cut(s) 77
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 539
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
AluBI AGCT 2 cut(s) 110, 207
AluI AGCT 2 cut(s) 110, 207
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 592
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 2 cut(s) 237, 439
ApeKI GCWGC 2 cut(s) 107, 674
ApoI RAATTY 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 155, 237
AsuII TTCGAA 1 cut(s) 661
AvaII GGWCC 1 cut(s) 155
BbvCI CCTCAGC 2 cut(s) 111, 519
BbvI GCAGC 2 cut(s) 119, 661
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 269, 682
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 2 cut(s) 108, 675
BlsI GCNGC 2 cut(s) 109, 676
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 155, 237
BmiI GGNNCC 3 cut(s) 156, 238, 508
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 534
Bpu10I CCTNAGC 2 cut(s) 111, 519
Bpu14I TTCGAA 1 cut(s) 661
BpuEI CTTGAG 2 cut(s) 229, 428
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 77, 240
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 470
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 77, 240
BseGI GGATG 2 cut(s) 121, 202
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 102, 533
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 119, 661
BshFI GGCC 2 cut(s) 239, 441
BsiSI CCGG 3 cut(s) 341, 471, 567
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 2 cut(s) 239, 441
Bsp119I TTCGAA 1 cut(s) 661
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 584, 599
BspANI GGCC 2 cut(s) 239, 441
BspCNI CTCAG 2 cut(s) 103, 532
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 156, 238, 508
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 592
BspT104I TTCGAA 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 77, 240
BssMI GATC 2 cut(s) 584, 599
BssNI GRCGYC 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 2 cut(s) 111, 519
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 121, 202
BstKTI GATC 2 cut(s) 587, 602
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 584, 599
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 2 cut(s) 542, 574
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 119, 661
BsuRI GGCC 2 cut(s) 239, 441
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 121, 202
Cac8I GCNNGC 1 cut(s) 679
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 155, 237
CseI GACGC 1 cut(s) 463
Csp6I GTAC 1 cut(s) 448
CviAII CATG 2 cut(s) 539, 571
CviJI RGCY 9 cut(s) 110, 207, 239, 294, 363, 441, 523, 529, 674
CviKI_1 RGCY 9 cut(s) 110, 207, 239, 294, 363, 441, 523, 529, 674
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 2 cut(s) 111, 519
DpnI GATC 2 cut(s) 586, 601
DpnII GATC 2 cut(s) 584, 599
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 2 cut(s) 398, 496
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 542, 574
FaiI YATR 4 cut(s) 532, 540, 572, 589
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 1 cut(s) 84
FatI CATG 2 cut(s) 538, 570
Fnu4HI GCNGC 2 cut(s) 108, 675
FokI GGATG 2 cut(s) 128, 209
Fsp4HI GCNGC 2 cut(s) 108, 675
FspBI CTAG 2 cut(s) 269, 682
GluI GCNGC 2 cut(s) 108, 675
HaeIII GGCC 2 cut(s) 239, 441
HapII CCGG 3 cut(s) 341, 471, 567
HgaI GACGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 2 cut(s) 542, 574
HinfI GANTC 1 cut(s) 145
HpaII CCGG 3 cut(s) 341, 471, 567
Hpy166II GTNNAC 3 cut(s) 372, 450, 484
Hpy188I TCNGA 2 cut(s) 378, 416
Hpy188III TCNNGA 5 cut(s) 269, 311, 332, 341, 611
Hpy8I GTNNAC 3 cut(s) 372, 450, 484
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 7 cut(s) 181, 214, 373, 377, 421, 520, 573
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 4 cut(s) 107, 165, 578, 596
HpyF3I CTNAG 2 cut(s) 111, 519
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 2 cut(s) 542, 574
Kpn2I TCCGGA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 584, 599
Lsp1109I GCAGC 2 cut(s) 119, 661
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 269, 682
MaeIII GTNAC 2 cut(s) 20, 556
MalI GATC 2 cut(s) 586, 601
MboI GATC 2 cut(s) 584, 599
MboII GAAGA 4 cut(s) 28, 53, 56, 140
MluCI AATT 2 cut(s) 404, 643
MmeI TCCRAC 1 cut(s) 238
MroI TCCGGA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 3 cut(s) 341, 471, 567
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
NdeII GATC 2 cut(s) 584, 599
NlaIII CATG 2 cut(s) 542, 574
NlaIV GGNNCC 3 cut(s) 156, 238, 508
NmuCI GTSAC 2 cut(s) 20, 556
NspI RCATGY 2 cut(s) 542, 574
NspV TTCGAA 1 cut(s) 661
OliI CACNNNNGTG 1 cut(s) 539
PciI ACATGT 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 109, 676
PpuMI RGGWCCY 1 cut(s) 155
PscI ACATGT 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 156, 238, 508
PspPI GGNCC 2 cut(s) 155, 237
PspPPI RGGWCCY 1 cut(s) 155
PstI CTGCAG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 539
SatI GCNGC 2 cut(s) 108, 675
Sau3AI GATC 2 cut(s) 584, 599
Sau96I GGNCC 2 cut(s) 155, 237
ScrFI CCNGG 1 cut(s) 79
SetI ASST 9 cut(s) 112, 209, 218, 322, 388, 483, 512, 565, 653
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 661
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 208, 443
SmoI CTYRAG 2 cut(s) 208, 443
Sse9I AATT 2 cut(s) 404, 643
SspMI CTAG 2 cut(s) 269, 682
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 612, 661
TasI AATT 2 cut(s) 404, 643
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 145
TseFI GTSAC 2 cut(s) 20, 556
TseI GCWGC 2 cut(s) 107, 674
Tsp45I GTSAC 2 cut(s) 20, 556
TspDTI ATGAA 2 cut(s) 72, 141
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 268
XceI RCATGY 2 cut(s) 542, 574
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 269, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.