Rh2AG578700

Pollen Ole e 1 allergen and extensin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001665
Physical Location & Seq
Reverse (-)
80828878 .. 80831105
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG578700.1

Sequence Viewer

Length: 1080 bp
ATGTCTTGGTTTCTAACAATATTCTTCCTCATTAGTTTCACATTTAGTACTCCTTCAGAGGCTAACCATGAGAAGAAGCTTCAACCTGCTGTGGTTATAGGCAAAGTTTACTGTGAGACATGTTTCCAAGATGGGTTCTCAAAATCCAGCCACTTCATTTCAGGGGCTTCTGTTGGTGTGGAGTGCAAAGATCAGACTTCATCAAAACCCAGCTTTCAAGCCCAAGTGAAGACAGATAACCAAGGAGTGTTCAAAGTCCAATTGCCTTTCTCAGTGAGCAAACATGTGAAGAAAATTGAAGGGTGTTCTGTGAAGCTGATTCGCAGCAGCGAACCGTATTGTGCTGTGGCCTCAGCAGCAGCTTCATCTTCACTTCACCTCAAATCAAGGAAGCAAGGAACTCACATTTTCTCAGCTGGGTTTTTCACCTTCAAGCCCCTAAACCAACCCAACCTATGTAACCAAAAACCAAGCCTCATCCAAAACAACAAGAAGGAAGTTATCACTAATTCCAAGAAACTCTCATTTTCTCCAACTGAGGATTTGACATTTCCCTCACCAGTTCAAGAACCCAGCTTTCCTGGTGTTCCTTCTCTCCCTAGACTTCCTTATCTTCCACCACTACCACAACTCCCTCCTCTCCCAGGTCTTCCAGGACTCCCAGGTCTTCCAGGAATAGGAATTCCAACTTTACCCCCCATCCCAGGAAAAGTAACAGAGTCCCATTCCAATACCAAAACTACAACTACCTCTCCAAAGACAGAGAGGCACCTAACTGAAGAAGAAAAACTAGCCCGCCCAGATTTTTTCTTCCCACCGAACCCTCTCAATCCACCATCAATTTTGCCTCCAAACCCTCTTCTGCCAAGCCCACCTCCACTTATCCCAAACCCATTTCAGCCTCCAGCAGCACCATTGATTCCAAATTTGCCACCATTGCCTAGCTTGCCACCACTACCAAGTTTAACTCCACCATCTCCACCACCACCATCATTCCCAACAATCCCTCCATTGACTCCATTCCCATTCCCACCTGTACCTCTCATCCCTGGAATCCCCCCTGCTTCTTCCTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

359

Amino Acids

38.6

Weight (kDa)

9.34

Isoelectric Point (pI)

68.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 3.6e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 663
Acc36I ACCTGC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 768
AciI CCGC 1 cut(s) 796
AcsI RAATTY 2 cut(s) 681, 925
AcuI CTGAAG 2 cut(s) 39, 798
AfaI GTAC 2 cut(s) 49, 1038
AfiI CCNNNNNNNGG 3 cut(s) 644, 677, 704
AflIII ACRYGT 2 cut(s) 119, 283
AgsI TTSAA 6 cut(s) 83, 218, 253, 299, 433, 566
AjnI CCWGG 7 cut(s) 580, 643, 652, 661, 670, 703, 1048
AluBI AGCT 7 cut(s) 79, 213, 316, 362, 416, 576, 945
AluI AGCT 7 cut(s) 79, 213, 316, 362, 416, 576, 945
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 5 cut(s) 324, 327, 356, 359, 908
ApoI RAATTY 2 cut(s) 681, 925
AsuHPI GGTGA 3 cut(s) 368, 418, 549
BanI GGYRCC 1 cut(s) 768
BbsI GAAGAC 3 cut(s) 236, 641, 659
BbvCI CCTCAGC 1 cut(s) 352
BbvI GCAGC 5 cut(s) 336, 339, 368, 371, 920
BccI CCATC 5 cut(s) 125, 707, 844, 982, 997
BciT130I CCWGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 3 cut(s) 600, 791, 942
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 5 cut(s) 325, 328, 357, 360, 909
BlsI GCNGC 5 cut(s) 326, 329, 358, 361, 910
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
BmiI GGNNCC 1 cut(s) 770
BmrFI CCNGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
BpiI GAAGAC 3 cut(s) 236, 641, 659
BpmI CTGGAG 1 cut(s) 888
Bpu10I CCTNAGC 1 cut(s) 352
BsaJI CCNNGG 5 cut(s) 241, 643, 661, 703, 1048
BsaXI ACNNNNNCTCC 6 cut(s) 615, 645, 736, 766, 991, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 644, 677, 704
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 1 cut(s) 935
BseBI CCWGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
BseDI CCNNGG 5 cut(s) 241, 643, 661, 703, 1048
BseGI GGATG 3 cut(s) 477, 699, 1044
BseLI CCNNNNNNNGG 3 cut(s) 644, 677, 704
BseMI GCAATG 1 cut(s) 935
BseMII CTCAG 4 cut(s) 285, 366, 426, 528
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 5 cut(s) 336, 339, 368, 371, 920
BseYI CCCAGC 3 cut(s) 209, 416, 572
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 768
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 3 cut(s) 644, 677, 704
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 796
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 4 cut(s) 284, 365, 425, 529
BspLI GGNNCC 1 cut(s) 770
BspMI ACCTGC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 768
BsrDI GCAATG 1 cut(s) 935
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 5 cut(s) 241, 643, 661, 703, 1048
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
Bst4CI ACNGT 2 cut(s) 113, 336
Bst6I CTCTTC 1 cut(s) 864
BstC8I GCNNGC 2 cut(s) 796, 947
BstDEI CTNAG 4 cut(s) 271, 352, 412, 537
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 3 cut(s) 477, 699, 1044
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 356, 937, 946
BstNI CCWGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
BstNSI RCATGY 2 cut(s) 123, 287
BstSCI CCNGG 7 cut(s) 580, 643, 652, 661, 670, 703, 1048
BstV1I GCAGC 5 cut(s) 336, 339, 368, 371, 920
BstV2I GAAGAC 3 cut(s) 236, 641, 659
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 3 cut(s) 477, 699, 1044
BtsIMutI CAGTG 1 cut(s) 279
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 796, 947
Csp6I GTAC 2 cut(s) 48, 1037
CviAII CATG 3 cut(s) 68, 120, 284
CviQI GTAC 2 cut(s) 48, 1037
DdeI CTNAG 4 cut(s) 271, 352, 412, 537
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 663
DseDI GACNNNNNNGTC 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 39, 798
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 7 cut(s) 580, 643, 652, 661, 670, 703, 1048
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 5 cut(s) 69, 98, 121, 285, 457
FaqI GGGAC 1 cut(s) 706
FatI CATG 3 cut(s) 67, 119, 283
FauI CCCGC 1 cut(s) 803
Fnu4HI GCNGC 5 cut(s) 325, 328, 357, 360, 909
FokI GGATG 3 cut(s) 464, 686, 1031
Fsp4HI GCNGC 5 cut(s) 325, 328, 357, 360, 909
FspBI CTAG 3 cut(s) 600, 791, 942
GluI GCNGC 5 cut(s) 325, 328, 357, 360, 909
GsaI CCCAGC 3 cut(s) 213, 420, 576
GsuI CTGGAG 1 cut(s) 888
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 3 cut(s) 71, 123, 287
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 6 cut(s) 319, 657, 719, 919, 1015, 1053
HphI GGTGA 3 cut(s) 368, 418, 549
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 58, 195
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 5 cut(s) 63, 293, 439, 487, 600
HpyCH4III ACNGT 2 cut(s) 113, 336
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 937, 946
HpyF3I CTNAG 4 cut(s) 271, 352, 412, 537
Hsp92II CATG 3 cut(s) 71, 123, 287
Kzo9I GATC 1 cut(s) 190
Lsp1109I GCAGC 5 cut(s) 336, 339, 368, 371, 920
MaeI CTAG 3 cut(s) 600, 791, 942
MaeIII GTNAC 2 cut(s) 458, 712
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MfeI CAATTG 1 cut(s) 260
MluCI AATT 6 cut(s) 260, 294, 508, 681, 840, 925
MlyI GAGTC 3 cut(s) 651, 728, 1009
MmeI TCCRAC 2 cut(s) 557, 710
MseI TTAA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
MwoI GCNNNNNNNGC 3 cut(s) 356, 937, 946
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 1 cut(s) 770
NspI RCATGY 2 cut(s) 123, 287
PciI ACATGT 2 cut(s) 119, 283
PfeI GAWTC 3 cut(s) 319, 919, 1053
PfoI TCCNGGA 2 cut(s) 652, 670
PkrI GCNGC 5 cut(s) 326, 329, 358, 361, 910
PleI GAGTC 3 cut(s) 651, 727, 1009
PpsI GAGTC 3 cut(s) 651, 727, 1009
PscI ACATGT 2 cut(s) 119, 283
Psp6I CCWGG 7 cut(s) 580, 643, 652, 661, 670, 703, 1048
PspFI CCCAGC 3 cut(s) 209, 416, 572
PspGI CCWGG 7 cut(s) 580, 643, 652, 661, 670, 703, 1048
PspN4I GGNNCC 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 49, 1038
RsaNI GTAC 2 cut(s) 48, 1037
SaqAI TTAA 1 cut(s) 965
SatI GCNGC 5 cut(s) 325, 328, 357, 360, 909
Sau3AI GATC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 3 cut(s) 651, 728, 1009
ScrFI CCNGG 7 cut(s) 582, 645, 654, 663, 672, 705, 1050
Sse9I AATT 6 cut(s) 260, 294, 508, 681, 840, 925
SsiI CCGC 1 cut(s) 796
SspI AATATT 1 cut(s) 21
SspMI CTAG 3 cut(s) 600, 791, 942
StyD4I CCNGG 7 cut(s) 580, 643, 652, 661, 670, 703, 1048
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 113, 336
TasI AATT 6 cut(s) 260, 294, 508, 681, 840, 925
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 3 cut(s) 319, 919, 1053
Tru1I TTAA 1 cut(s) 965
Tru9I TTAA 1 cut(s) 965
TscAI CASTG 1 cut(s) 279
TseI GCWGC 5 cut(s) 324, 327, 356, 359, 908
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspRI CASTG 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 2 cut(s) 681, 925
XceI RCATGY 2 cut(s) 123, 287
XspI CTAG 3 cut(s) 600, 791, 942
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.