pycom09g00250

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001665
Physical Location & Seq
Forward (+)
235942 .. 236938
997 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00250.2

Sequence Viewer

Length: 411 bp
ATGTCTTGGCTTACAGTTATCTTTCTGGTTACTACTCTTACATTTCATACTCCTTCAGAGGCTAGCCACGAGAAGAACGATCCTTCTGCAGTTGTTGTAGGCACTGTCTACTGTGACTCATGTTTCCAAGAGGATTTCTCACATACCAGCCATTTCATTTCAGGGGCTTCTGTTGATGTGGAATGCAAAGATGGGAGTTCAACGAAACCAAGTTTTAAGGCACAAGTGAAAACAAATAGCCATGGACAATTCAAAGTCCATCTGCCCTTCTCAGTGAGCAAACAAGTGAAGAAAATTGAAGGATGCTCTGTGAAACTAATCAGCAGCAGTGAACCCTGTTGGGGTTTAAAAATGCTTCACTACTTTGGAGATGTTTATCTCACAAAGAAAAATGTAACGCAGCGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

137

Amino Acids

15.11

Weight (kDa)

8.27

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 3 cut(s) 201, 253, 299
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 324, 400
AsuNHI GCTAGC 1 cut(s) 62
BauI CACGAG 1 cut(s) 68
BbvI GCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 185, 267
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 325, 401
BlsI GCNGC 2 cut(s) 326, 402
BmsI GCATC 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 308
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 341
BsmI GAATGC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 66
BspPI GGATC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 16, 106, 113
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 102, 279, 334
Cac8I GCNNGC 1 cut(s) 64
CviAII CATG 2 cut(s) 120, 242
CviJI RGCY 6 cut(s) 10, 62, 66, 150, 167, 240
CviKI_1 RGCY 6 cut(s) 10, 62, 66, 150, 167, 240
DdeI CTNAG 1 cut(s) 271
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 123, 245
FaiI YATR 4 cut(s) 48, 121, 144, 243
FatI CATG 2 cut(s) 119, 241
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 325, 401
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 325, 401
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 325, 401
Hin1II CATG 2 cut(s) 123, 245
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 109, 332
Hpy188I TCNGA 1 cut(s) 58
Hpy8I GTNNAC 2 cut(s) 109, 332
HpyAV CCTTC 4 cut(s) 63, 93, 277, 293
HpyCH4III ACNGT 3 cut(s) 16, 106, 113
HpyCH4V TGCA 2 cut(s) 89, 186
HpyF3I CTNAG 1 cut(s) 271
Hsp92II CATG 2 cut(s) 123, 245
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 11, 147, 160, 349
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 1 cut(s) 293
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 28, 113, 394
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 85, 301
MluCI AATT 3 cut(s) 248, 294, 406
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 52, 124
MseI TTAA 2 cut(s) 216, 347
MspA1I CMGCKG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 188
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 79
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 123, 245
NmuCI GTSAC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 326, 402
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PstI CTGCAG 1 cut(s) 91
SaqAI TTAA 2 cut(s) 216, 347
SatI GCNGC 2 cut(s) 325, 401
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 110
SfaNI GCATC 1 cut(s) 293
SfcI CTRYAG 1 cut(s) 87
Sse9I AATT 3 cut(s) 248, 294, 406
SsiI CCGC 1 cut(s) 403
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 16, 106, 113
TasI AATT 3 cut(s) 248, 294, 406
Tru1I TTAA 2 cut(s) 216, 347
Tru9I TTAA 2 cut(s) 216, 347
TscAI CASTG 3 cut(s) 109, 279, 334
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 324, 400
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 35, 145
TspRI CASTG 3 cut(s) 109, 279, 334
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.