Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001665

Physical Location & Seq

Genomic Coordinates Reverse (-)

35380921 .. 35383102

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46340.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCTTGGTTTCTAACCATATTCCTTCTCAGTACTCTAGCATTTGCTACTCCTTCAGTTGCTAACCATGAGGAGCTGCCTCAGTCTGGTGTTGTAGTAGGCAAAGTATACTGTGATACTTGCTTCCAAGACGGGTTCGTGAAAACAAGCCACTTCATTTCTGGGGCGTCTGTTGGTGTGGAGTGCAAAGATGGCAGTTCATCAAAACCTAGTTTTCAAGCACAAGCGAAAACAGATAACCAAGGAGTGTTCAAAGTTCCCTTGCCTTTCTCAGTCAGCAAACATGTGAAGGGAATTGAAGGGTGTTCTGTGAAGCTAATCAGCAGCAGTGAACCTCATTGTGCTGTAGCCTCAACAGCAGCTTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGGACACACATTTTCTCAGCTGGGTTATTCGCCTTCAAGCCCAAGCAAGGCAACCTATGTAACCAAAAACTAAGCACCAACAAGCTGTCAGTTCCCTCATCATCGGTTCAAGAACAAAAGTTACTAGGACTCCCAGGTCTTCCGGGACTACCAGGTCTACCTGGACTTCCGGGTCTTCCGGGTCTTCCGGGACTCCCAGGGCTTCCCGGAATCGGTGCCCACCCTGAGAAAATGGAAACCAAAACTACTACGTCTAAGGTAGAGAGGCACCTGATTGCCCTAGTCCCAGGTCAAAAAGCAAGCACAAAATCGGTTGAAGAACAAAAGTTACTAGGACTCCCAGGTCTTCCGGGACTCCCAGATCTTCCGGGACTCCCAGGCCTTCCCGGACTCCCAGGTCTTCCTGGACTTCCAGGAATCGGGGCCCACCAAGAGAAAATACCAGAGTCCAATTCTGAAACCAAAACTTCAAAGGTAGAGAGACACCTGCTTGTCCCAGGTCTTCCAGGACTCCCGGGACTTCCGGGACTTCCAGGGCTTCCGGGTCTCCCAGGGCTTCCGGGACTTCCGGGTCTCCCAGGGCTTCCGGGACTCCCCGGACTCCCAGGTCTTCCAGGAATAGGAGCACAAACAGAAAAAGTTACAGAAAAGACTGATGATGTAGCCTCTTCTTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

359

Amino Acids

36.54

Weight (kDa)

8.94

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	32 - 120	9.7e-21	Pollen protein Ole e 1 like
Collagen	PF01391	269 - 308	1.4e-06	Collagen triple helix repeat (20 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15780
fragaria_vesca	FvH4_6g46330 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340
malus_domestica	MD09G1074600.v1.1 MD09G1074800.v1.1 MD09G1075000.v1.1 MD09G1075400.v1.1 MD09G1075500.v1.1 MD16G1014300.v1.1 MD17G1066000.v1.1
prunus_persica	Prupe.3G248600_v2.0.a1 Prupe.3G248700_v2.0.a1
pyrus_communis	pycom09g00170 pycom09g00180 pycom09g00190 pycom09g00210 pycom09g00240 pycom09g00250 pycom17g06630
rosa_chinensis	RchiOBHm_Chr2g0164801 RchiOBHm_Chr2g0164841
rosa_laevigata	RLG00000021491 RLG00000021493
rosa_multiflora	Rmu_co8019616.1_g000001 Rmu_sc0000946.1_g000035 Rmu_sc0006207.1_g000006 Rmu_sc0022409.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086260 Rroxscaffold_2G00086280
rosa_rugosa	Rorug02G0510600 Rorug02G0510700 Rorug02G0510700 Rorug02G0510800 Rorug02G0510900 Rorug02G0510900
rosa_samantha	Rh2AG578700 Rh2AG579000 Rh2BG590000 Rh2BG590100 Rh2CG560600 Rh2CG560700 Rh2DG600200 Rh2DG600400
rosa_wichuraiana	Rw2G048050 Rw2G048060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	891
AasI	GACNNNNNNGTC	7 cut(s)	531, 549, 567, 738, 792, 966, 1002
Acc36I	ACCTGC	1 cut(s)	891
AccB1I	GGYRCC	2 cut(s)	611, 663
AccI	GTMKAC	2 cut(s)	108, 553
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	5 cut(s)	86, 443, 608, 815, 1016
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	7 cut(s)	218, 253, 299, 433, 506, 713, 867
AluBI	AGCT	5 cut(s)	76, 316, 362, 416, 481
AluI	AGCT	5 cut(s)	76, 316, 362, 416, 481
Alw21I	GWGCWC	1 cut(s)	1024
Alw26I	GTCTC	3 cut(s)	871, 947, 974
Ama87I	CYCGRG	1 cut(s)	910
AoxI	GGCC	2 cut(s)	775, 819
ApaI	GGGCCC	1 cut(s)	823
ApeKI	GCWGC	3 cut(s)	76, 324, 359
AspS9I	GGNCC	2 cut(s)	819, 820
AvaI	CYCGRG	1 cut(s)	910
BaeGI	GKGCMC	2 cut(s)	616, 823
BanI	GGYRCC	2 cut(s)	611, 663
BanII	GRGCYC	1 cut(s)	823
BbsI	GAAGAC	7 cut(s)	527, 563, 572, 734, 788, 890, 998
Bbv12I	GWGCWC	1 cut(s)	1024
BbvI	GCAGC	3 cut(s)	63, 336, 371
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	3 cut(s)	871, 947, 974
BfaI	CTAG	5 cut(s)	38, 210, 521, 677, 728
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	891
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	3 cut(s)	77, 325, 360
BlsI	GCNGC	3 cut(s)	78, 326, 361
BmcAI	AGTACT	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	2 cut(s)	819, 820
BmiI	GGNNCC	4 cut(s)	613, 665, 820, 821
BpiI	GAAGAC	7 cut(s)	527, 563, 572, 734, 788, 890, 998
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	167
BsaI	GGTCTC	2 cut(s)	947, 974
BsaXI	ACNNNNNCTCC	4 cut(s)	510, 540, 717, 747
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 443, 608, 815, 1016
BseLI	CCNNNNNNNGG	5 cut(s)	86, 443, 608, 815, 1016
BseMII	CTCAG	5 cut(s)	43, 95, 285, 426, 612
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	2 cut(s)	616, 823
BseXI	GCAGC	3 cut(s)	63, 336, 371
BseYI	CCCAGC	1 cut(s)	416
BshFI	GGCC	2 cut(s)	777, 821
BshNI	GGYRCC	2 cut(s)	611, 663
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	910
BslI	CCNNNNNNNGG	5 cut(s)	86, 443, 608, 815, 1016
BsmAI	GTCTC	3 cut(s)	871, 947, 974
BsnI	GGCC	2 cut(s)	777, 821
Bso31I	GGTCTC	2 cut(s)	947, 974
BsoBI	CYCGRG	1 cut(s)	910
Bsp120I	GGGCCC	1 cut(s)	819
Bsp1286I	GDGCHC	3 cut(s)	616, 823, 1024
Bsp143I	GATC	1 cut(s)	757
BspANI	GGCC	2 cut(s)	777, 821
BspCNI	CTCAG	5 cut(s)	42, 94, 284, 425, 613
BspLI	GGNNCC	4 cut(s)	613, 665, 820, 821
BspMI	ACCTGC	1 cut(s)	891
BspT107I	GGYRCC	2 cut(s)	611, 663
BspTNI	GGTCTC	2 cut(s)	947, 974
BssMI	GATC	1 cut(s)	757
BssNAI	GTATAC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	1069
BstACI	GRCGYC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	7 cut(s)	29, 81, 271, 412, 467, 621, 651
BstKTI	GATC	1 cut(s)	760
BstMAI	GTCTC	3 cut(s)	871, 947, 974
BstMBI	GATC	1 cut(s)	757
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 356
BstNSI	RCATGY	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	2 cut(s)	616, 823
BstV1I	GCAGC	3 cut(s)	63, 336, 371
BstV2I	GAAGAC	7 cut(s)	527, 563, 572, 734, 788, 890, 998
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	777, 821
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	819, 820
Cfr9I	CCCGGG	1 cut(s)	910
CseI	GACGC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	68, 284
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	7 cut(s)	29, 81, 271, 412, 467, 621, 651
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
DrdI	GACNNNNNNGTC	7 cut(s)	531, 549, 567, 738, 792, 966, 1002
DseDI	GACNNNNNNGTC	7 cut(s)	531, 549, 567, 738, 792, 966, 1002
Eam1104I	CTCTTC	1 cut(s)	1069
EarI	CTCTTC	1 cut(s)	1069
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	823
Eco31I	GGTCTC	2 cut(s)	947, 974
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	71, 287
FaiI	YATR	5 cut(s)	20, 69, 109, 285, 454
FatI	CATG	2 cut(s)	67, 283
FblI	GTMKAC	2 cut(s)	108, 553
Fnu4HI	GCNGC	3 cut(s)	77, 325, 360
FriOI	GRGCYC	1 cut(s)	823
Fsp4HI	GCNGC	3 cut(s)	77, 325, 360
FspBI	CTAG	5 cut(s)	38, 210, 521, 677, 728
GluI	GCNGC	3 cut(s)	77, 325, 360
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	777, 821
HgaI	GACGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	71, 287
Hpy166II	GTNNAC	3 cut(s)	109, 332, 554
Hpy188I	TCNGA	1 cut(s)	853
Hpy188III	TCNNGA	2 cut(s)	139, 506
Hpy8I	GTNNAC	3 cut(s)	109, 332, 554
HpyAV	CCTTC	6 cut(s)	35, 63, 283, 293, 439, 788
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 356
HpyF3I	CTNAG	7 cut(s)	29, 81, 271, 412, 467, 621, 651
HpySE526I	ACGT	1 cut(s)	647
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	71, 287
Kzo9I	GATC	1 cut(s)	757
LmnI	GCTCC	2 cut(s)	73, 1019
Lsp1109I	GCAGC	3 cut(s)	63, 336, 371
MabI	ACCWGGT	1 cut(s)	547
MaeI	CTAG	5 cut(s)	38, 210, 521, 677, 728
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	4 cut(s)	455, 516, 723, 1036
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	3 cut(s)	616, 823, 1024
MluCI	AATT	2 cut(s)	294, 847
MnlI	CCTC	8 cut(s)	64, 90, 345, 361, 389, 502, 654, 1072
MspA1I	CMGCKG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	192, 356
NdeII	GATC	1 cut(s)	757
NlaIII	CATG	2 cut(s)	71, 287
NlaIV	GGNNCC	4 cut(s)	613, 665, 820, 821
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	891
PasI	CCCWGGG	3 cut(s)	593, 947, 974
PceI	AGGCCT	1 cut(s)	777
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	606, 813
PkrI	GCNGC	3 cut(s)	78, 326, 361
PscI	ACATGT	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	416
PspN4I	GGNNCC	4 cut(s)	613, 665, 820, 821
PspOMI	GGGCCC	1 cut(s)	819
PspPI	GGNCC	2 cut(s)	819, 820
PsrI	GAACNNNNNNTAC	4 cut(s)	501, 533, 708, 740
PsuI	RGATCY	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SatI	GCNGC	3 cut(s)	77, 325, 360
Sau3AI	GATC	1 cut(s)	757
Sau96I	GGNCC	2 cut(s)	819, 820
ScaI	AGTACT	1 cut(s)	34
SduI	GDGCHC	3 cut(s)	616, 823, 1024
SexAI	ACCWGGT	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	345
SmaI	CCCGGG	1 cut(s)	912
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	294, 847
SseBI	AGGCCT	1 cut(s)	777
SspMI	CTAG	5 cut(s)	38, 210, 521, 677, 728
StuI	AGGCCT	1 cut(s)	777
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	650
TasI	AATT	2 cut(s)	294, 847
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	606, 813
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	3 cut(s)	76, 324, 359
TspDTI	ATGAA	3 cut(s)	145, 189, 354
TspMI	CCCGGG	1 cut(s)	910
TspRI	CASTG	1 cut(s)	334
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmaI	CCCGGG	1 cut(s)	910
XmiI	GTMKAC	2 cut(s)	108, 553
XspI	CTAG	5 cut(s)	38, 210, 521, 677, 728
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.