MD09G1075400.v1.1

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001665
Physical Location & Seq
Forward (+)
5291078 .. 5302055
10978 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1075400.v1.1.491

Sequence Viewer

Length: 633 bp
ATGTCTTGGTTTCTTACTGTTATCTTTCTGGTTACTACTCTTACATTTCATACTCCTTCAGAGGCTAGCTATGAGGAGATCCAGCCTTCTGCAGTTGTTGTAGGCACTGTATACTGTGACACATGTTTCCAAGAGGATTTCTCAAATACTAGCCATTTCATTTCAGAGGCTTCTGTTGGTGTGGAATGCAAAGATGGGACTTCAACAAAACCAAGTTTCAACGTAAAAGTGAAAACAAACAGCCATGGGCAATTCAAAGTCAATCTGCCCTTCTCAGTGAGCAAAGATGTCAAGAAAATTGAAGGATGCTCCGTGAAACTAATCCGCAGCAGTGAACCCTACTGTGCTGTGGCCTCATCAGCCACCTCATCTTCCCTACACCTCAAGGCAAGAAAGCAAGGGACTCACATATTCTCTGCTGGTTTCTTCACCTTCAAGCCTCTCAAGCAACCCAGCTTATGCAACCAGAAACCCAGCATTCAGAATTCCAAGAAATTAAACTCCCAGAAGTTCTCAGAGATGGCATTCCCATCCTCCTCTCAGGTGGACCCCAAAATGCCTGATCCCTCTCTCAACCAATCTGATCTCCTAGGTGGACCCCACAATGCCCGATCTCCCTCTCATCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

211

Amino Acids

22.96

Weight (kDa)

9.0

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 33 - 122 1.5e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 325
AclWI GGATC 2 cut(s) 73, 557
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 5 cut(s) 204, 220, 256, 302, 436
AluBI AGCT 2 cut(s) 69, 456
AluI AGCT 2 cut(s) 69, 456
AlwI GGATC 2 cut(s) 73, 557
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 484
AspA2I CCTAGG 1 cut(s) 589
AspS9I GGNCC 2 cut(s) 547, 596
AsuHPI GGTGA 1 cut(s) 421
AsuNHI GCTAGC 1 cut(s) 65
AvaII GGWCC 2 cut(s) 547, 596
AvrII CCTAGG 1 cut(s) 589
BbvI GCAGC 1 cut(s) 339
BccI CCATC 3 cut(s) 188, 514, 538
BfaI CTAG 3 cut(s) 66, 150, 590
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 328
BlnI CCTAGG 1 cut(s) 589
BlsI GCNGC 1 cut(s) 329
Bme18I GGWCC 2 cut(s) 547, 596
BmgT120I GGNCC 2 cut(s) 547, 596
BmiI GGNNCC 2 cut(s) 549, 598
BmsI GCATC 1 cut(s) 296
BmtI GCTAGC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuEI CTTGAG 2 cut(s) 368, 428
BsaJI CCNNGG 2 cut(s) 244, 589
BseDI CCNNGG 2 cut(s) 244, 589
BseGI GGATG 3 cut(s) 311, 530, 622
BseMII CTCAG 3 cut(s) 288, 528, 554
BseRI GAGGAG 2 cut(s) 89, 526
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 2 cut(s) 452, 473
BshFI GGCC 1 cut(s) 353
BslFI GGGAC 2 cut(s) 211, 415
BsmFI GGGAC 2 cut(s) 211, 415
BsmI GAATGC 3 cut(s) 191, 477, 524
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 4 cut(s) 78, 562, 583, 611
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 325
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 3 cut(s) 287, 527, 553
BspLI GGNNCC 2 cut(s) 549, 598
BspMAI CTGCAG 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 69
BspPI GGATC 2 cut(s) 73, 557
BssECI CCNNGG 2 cut(s) 244, 589
BssMI GATC 4 cut(s) 78, 562, 583, 611
BssNAI GTATAC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 244, 589
Bst1107I GTATAC 1 cut(s) 112
Bst4CI ACNGT 4 cut(s) 19, 109, 116, 344
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 274, 514, 540
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 311, 530, 622
BstKTI GATC 4 cut(s) 81, 565, 586, 614
BstMBI GATC 4 cut(s) 78, 562, 583, 611
BstMWI GCNNNNNNNGC 2 cut(s) 359, 445
BstNSI RCATGY 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BstZ17I GTATAC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 311, 530, 622
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 3 cut(s) 105, 282, 337
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 547, 596
CviAII CATG 2 cut(s) 123, 245
DdeI CTNAG 3 cut(s) 274, 514, 540
DpnI GATC 4 cut(s) 80, 564, 585, 613
DpnII GATC 4 cut(s) 78, 562, 583, 611
Eco130I CCWWGG 2 cut(s) 244, 589
Eco47I GGWCC 2 cut(s) 547, 596
Eco57I CTGAAG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 244, 589
ErhI CCWWGG 2 cut(s) 244, 589
FaeI CATG 2 cut(s) 126, 248
FaiI YATR 7 cut(s) 51, 72, 112, 124, 246, 410, 460
FaqI GGGAC 2 cut(s) 211, 415
FatI CATG 2 cut(s) 122, 244
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 3 cut(s) 318, 517, 609
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 3 cut(s) 66, 150, 590
GluI GCNGC 1 cut(s) 328
GsaI CCCAGC 2 cut(s) 456, 477
HaeIII GGCC 1 cut(s) 353
Hin1II CATG 2 cut(s) 126, 248
HinfI GANTC 1 cut(s) 403
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 4 cut(s) 112, 335, 547, 596
Hpy188I TCNGA 5 cut(s) 61, 166, 483, 517, 583
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 4 cut(s) 112, 335, 547, 596
HpyAV CCTTC 5 cut(s) 66, 96, 280, 296, 442
HpyCH4III ACNGT 4 cut(s) 19, 109, 116, 344
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 92, 189, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 445
HpyF3I CTNAG 3 cut(s) 274, 514, 540
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 126, 248
Kzo9I GATC 4 cut(s) 78, 562, 583, 611
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 9 cut(s) 14, 95, 405, 466, 479, 487, 518, 527, 573
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 1 cut(s) 296
MaeI CTAG 3 cut(s) 66, 150, 590
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 31, 116
MalI GATC 4 cut(s) 80, 564, 585, 613
MboI GATC 4 cut(s) 78, 562, 583, 611
MboII GAAGA 2 cut(s) 363, 418
MflI RGATCY 1 cut(s) 78
MluCI AATT 4 cut(s) 251, 297, 484, 494
MlyI GAGTC 1 cut(s) 397
MseI TTAA 1 cut(s) 497
Mva1269I GAATGC 3 cut(s) 191, 477, 524
MwoI GCNNNNNNNGC 2 cut(s) 359, 445
NcoI CCATGG 1 cut(s) 244
NdeII GATC 4 cut(s) 78, 562, 583, 611
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 2 cut(s) 126, 248
NlaIV GGNNCC 2 cut(s) 549, 598
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 126
PciI ACATGT 1 cut(s) 122
PctI GAATGC 3 cut(s) 191, 477, 524
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 122
PspFI CCCAGC 2 cut(s) 452, 473
PspN4I GGNNCC 2 cut(s) 549, 598
PspPI GGNCC 2 cut(s) 547, 596
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 78
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 4 cut(s) 78, 562, 583, 611
Sau96I GGNCC 2 cut(s) 547, 596
SchI GAGTC 1 cut(s) 397
SetI ASST 8 cut(s) 71, 225, 368, 384, 434, 458, 546, 595
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 547, 596
SmlI CTYRAG 2 cut(s) 383, 443
SmoI CTYRAG 2 cut(s) 383, 443
Sse9I AATT 4 cut(s) 251, 297, 484, 494
SsiI CCGC 1 cut(s) 325
SspMI CTAG 3 cut(s) 66, 150, 590
StyI CCWWGG 2 cut(s) 244, 589
TaaI ACNGT 4 cut(s) 19, 109, 116, 344
TaiI ACGT 1 cut(s) 225
TasI AATT 4 cut(s) 251, 297, 484, 494
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 3 cut(s) 112, 282, 337
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 38, 148
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 3 cut(s) 112, 282, 337
VpaK11BI GGWCC 2 cut(s) 547, 596
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 126
XmaJI CCTAGG 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 3 cut(s) 66, 150, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.