Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001665

Physical Location & Seq

Genomic Coordinates Reverse (-)

64141544 .. 64142889

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0510700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCGCTGTTGAGGTTCAATCGGCACAGACCGCTTTCGCTGCAGAGAACACAACTCATCAACATGAGGAACCAGCTAACGCTCAAGAGACTACCACTGCTGCTACTACTGAAGTAGTGACAGTAGCAGAACCAGCTGAAGTAGAACCGGAGCCTGTGAAGGCGGAGGAGGAGCCAGCTGCTGAGGTGGCTTCGGATGAGCCAGCAGCTGCGGCTCCAGAAGCTGAAACCCCAGTTGAAGTTGTGACAAAGGAGGTGGCTCTAGAGGAAGTTGTCCCGTCAGAAGAAGCACCAGTTGAGAAGACTACTGAAGAGGAAACTACTCCTGATCAGGCTGATAAGGTAGAGCCGGAGCCAGAAGAACCAGTCGTCGACGTTGTGGAGGAGACCAAAGAGAACAGTACTGGTGATGATGTTCAGTCTGTTGAGACTACTCCTCCGGTGGCGCCAGCACCGGAAGCAGAACCCGAGCTGGAATCGGCAGCTGAGGAGCCTAAGGAAGAGAAGCCTGCAGTTGAGGAAGAGAAGTCAGCTGCTGCTGAGGAGGAGAAAGTTGATACTGAAGTCCCAGTAGAGAAAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

195

Amino Acids

20.63

Weight (kDa)

4.05

Isoelectric Point (pI)

75.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15780
fragaria_vesca	FvH4_6g46330 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340 FvH4_6g46340
malus_domestica	MD09G1074600.v1.1 MD09G1074800.v1.1 MD09G1075000.v1.1 MD09G1075400.v1.1 MD09G1075500.v1.1 MD16G1014300.v1.1 MD17G1066000.v1.1
prunus_persica	Prupe.3G248600_v2.0.a1 Prupe.3G248700_v2.0.a1
pyrus_communis	pycom09g00170 pycom09g00180 pycom09g00190 pycom09g00210 pycom09g00240 pycom09g00250 pycom17g06630
rosa_chinensis	RchiOBHm_Chr2g0164801 RchiOBHm_Chr2g0164841
rosa_laevigata	RLG00000021491 RLG00000021493
rosa_multiflora	Rmu_co8019616.1_g000001 Rmu_sc0000946.1_g000035 Rmu_sc0006207.1_g000006 Rmu_sc0022409.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086260 Rroxscaffold_2G00086280
rosa_rugosa	Rorug02G0510600 Rorug02G0510700 Rorug02G0510700 Rorug02G0510800 Rorug02G0510900 Rorug02G0510900
rosa_samantha	Rh2AG578700 Rh2AG579000 Rh2BG590000 Rh2BG590100 Rh2CG560600 Rh2CG560700 Rh2DG600200 Rh2DG600400
rosa_wichuraiana	Rw2G048050 Rw2G048060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	4 cut(s)	6, 33, 164, 212
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	4 cut(s)	132, 159, 330, 582
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	20, 239
AluBI	AGCT	9 cut(s)	77, 137, 179, 209, 224, 472, 485, 533, 581
AluI	AGCT	9 cut(s)	77, 137, 179, 209, 224, 472, 485, 533, 581
Alw26I	GTCTC	3 cut(s)	83, 380, 422
AlwNI	CAGNNNCTG	4 cut(s)	182, 209, 224, 536
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	8 cut(s)	41, 101, 179, 206, 209, 482, 533, 536
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	495
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	308
BbvCI	CCTCAGC	3 cut(s)	183, 486, 540
BbvI	GCAGC	8 cut(s)	28, 88, 166, 196, 218, 494, 520, 523
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	83, 380, 422
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	42, 510
BfoI	RGCGCY	1 cut(s)	449
BmcAI	AGTACT	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	467
BmiI	GGNNCC	7 cut(s)	72, 153, 174, 216, 354, 447, 492
BmrI	ACTGGG	2 cut(s)	227, 563
BmuI	ACTGGG	2 cut(s)	227, 563
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	3 cut(s)	183, 486, 540
BpuEI	CTTGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	380
BsaWI	WCCGGW	3 cut(s)	148, 439, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bse1I	ACTGG	5 cut(s)	233, 293, 365, 409, 569
Bse21I	CCTNAGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	4 cut(s)	174, 477, 531, 573
BseNI	ACTGG	5 cut(s)	233, 293, 365, 409, 569
BseRI	GAGGAG	7 cut(s)	182, 185, 398, 426, 503, 557, 560
BseXI	GCAGC	8 cut(s)	28, 88, 166, 196, 218, 494, 520, 523
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	4 cut(s)	149, 350, 440, 455
BslFI	GGGAC	2 cut(s)	260, 551
BsmAI	GTCTC	3 cut(s)	83, 380, 422
BsmFI	GGGAC	2 cut(s)	260, 551
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	467
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	6, 33, 164, 212
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	175, 478, 532, 574
BspLI	GGNNCC	7 cut(s)	72, 153, 174, 216, 354, 447, 492
BspMAI	CTGCAG	2 cut(s)	46, 514
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	380
BsrI	ACTGG	5 cut(s)	233, 293, 365, 409, 569
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	124, 401
Bst6I	CTCTTC	3 cut(s)	306, 495, 516
BstACI	GRCGYC	1 cut(s)	446
BstC8I	GCNNGC	4 cut(s)	177, 204, 450, 510
BstDEI	CTNAG	5 cut(s)	183, 486, 495, 540, 582
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	3 cut(s)	83, 380, 422
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 134, 188, 212, 221, 458
BstSFI	CTRYAG	2 cut(s)	42, 510
BstV1I	GCAGC	8 cut(s)	28, 88, 166, 196, 218, 494, 520, 523
BstV2I	GAAGAC	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	177, 204, 450, 510
CaiI	CAGNNNCTG	4 cut(s)	182, 209, 224, 536
CfoI	GCGC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	1 cut(s)	65
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	5 cut(s)	183, 486, 495, 540, 582
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	306, 495, 516
EarI	CTCTTC	3 cut(s)	306, 495, 516
EciI	GGCGGA	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	380
Eco57I	CTGAAG	4 cut(s)	132, 159, 330, 582
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	467
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
FaeI	CATG	1 cut(s)	68
FaiI	YATR	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	260, 551
FatI	CATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	149, 350, 440, 455
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	4 cut(s)	149, 350, 440, 455
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	196, 283
Hpy188III	TCNNGA	4 cut(s)	86, 218, 263, 326
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	374, 377
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	124, 401
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	44, 512
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 134, 188, 212, 221, 458
HpyF3I	CTNAG	5 cut(s)	183, 486, 495, 540, 582
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	1 cut(s)	446
KasI	GGCGCC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	5 cut(s)	151, 172, 220, 352, 490
Lsp1109I	GCAGC	8 cut(s)	28, 88, 166, 196, 218, 494, 520, 523
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	118, 244
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	296, 313, 323, 371, 512, 533
Mly113I	GGCGCC	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	6 cut(s)	8, 137, 179, 209, 485, 533
MspI	CCGG	4 cut(s)	149, 350, 440, 455
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 134, 188, 212, 221, 458
NarI	GGCGCC	1 cut(s)	446
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	7 cut(s)	72, 153, 174, 216, 354, 447, 492
NmuCI	GTSAC	2 cut(s)	118, 244
PfeI	GAWTC	1 cut(s)	476
PluTI	GGCGCC	1 cut(s)	449
PspN4I	GGNNCC	7 cut(s)	72, 153, 174, 216, 354, 447, 492
PstI	CTGCAG	2 cut(s)	46, 514
PstNI	CAGNNNCTG	4 cut(s)	182, 209, 224, 536
PvuII	CAGCTG	5 cut(s)	137, 179, 209, 485, 533
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	371
Sau3AI	GATC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	42, 510
SfoI	GGCGCC	1 cut(s)	447
SgrDI	CGTCGACG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SsiI	CCGC	4 cut(s)	6, 33, 164, 212
SspDI	GGCGCC	1 cut(s)	445
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	124, 401
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	372
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	2 cut(s)	8, 215
TfiI	GAWTC	1 cut(s)	476
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	2 cut(s)	118, 244
TseI	GCWGC	8 cut(s)	41, 101, 179, 206, 209, 482, 533, 536
Tsp45I	GTSAC	2 cut(s)	118, 244
TspRI	CASTG	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.