Rroxscaffold_2G00086260

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001665
Physical Location & Seq
Forward (+)
8475683 .. 8477197
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086260.1

Sequence Viewer

Length: 999 bp
ATGTCTTGGTTTCTCACCATATTCCTTCTCATTAGTCTAGTATTTATCACTCCTTCAAAGGCTAACCATGAGGAGAAGGTTCAATCTGCCGTTGTTATAGGCAAAGTATACTGTGATACATGCTTCCAAGACGGGTTCGAGAAAACTAGCCACTTCATTTCTGGGGCCTCTGTTGGTGTGGAGTGCAAAGATGAGAGTTCATCAAAGCCAAGTTTTCAAGCACAAGTGAAAACAGATAACCAAGGAGTGTTCAAAGTCCACTTGCCTTTCTCAGTAAGCAAACATGTGAAGGAAATTGAAGGGTGTTCTGTGAAGCTAACCAGCAGCAGTGAACCCCACTGTGCTGTGGCCTCAACAGCAGCTTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGAACACACATTTTCTCAGCTGGGTTTTTCGCCTTCAAGCCCCTAAAGCAAGGCAACCTATGTAACCAAAAATCAAGCGCCAACAAGCTGCCATTTTCCTCACCAATTCAACAACAAGACATATTGGGAATTGGACTCCCAGGTCTTCCAGGACTACCAGGTTTGCCGGGACTTCCAGGTCTACCTGGACTTCCGGGTCTTCCAGGACTCCCAGGACTCCCAGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGGAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATGGGAGTCCGCACAGAAAAAATTACAGAGAAAAATGATGATGGAGCCCAGGCCGTCCCACTTGCTTCTTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

332

Amino Acids

34.36

Weight (kDa)

8.66

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 4.2e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 537, 573, 591, 897
AccB1I GGYRCC 2 cut(s) 702, 837
AccI GTMKAC 2 cut(s) 108, 577
AciI CCGC 1 cut(s) 928
AfiI CCNNNNNNNGG 3 cut(s) 632, 767, 920
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 7 cut(s) 57, 83, 218, 253, 299, 433, 506
AluBI AGCT 6 cut(s) 316, 362, 416, 484, 638, 773
AluI AGCT 6 cut(s) 316, 362, 416, 484, 638, 773
Alw21I GWGCWC 2 cut(s) 640, 775
AoxI GGCC 3 cut(s) 165, 348, 969
ApeKI GCWGC 3 cut(s) 324, 359, 484
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 4 cut(s) 564, 591, 726, 861
AsuHPI GGTGA 2 cut(s) 7, 489
BanI GGYRCC 2 cut(s) 702, 837
BanII GRGCYC 3 cut(s) 640, 775, 967
BbsI GAAGAC 7 cut(s) 533, 587, 713, 722, 848, 857, 893
Bbv12I GWGCWC 2 cut(s) 640, 775
BbvI GCAGC 3 cut(s) 336, 371, 471
BccI CCATC 1 cut(s) 953
BceAI ACGGC 2 cut(s) 74, 956
BcnI CCSGG 4 cut(s) 564, 591, 726, 861
BfaI CTAG 2 cut(s) 38, 147
BfoI RGCGCY 1 cut(s) 477
BisI GCNGC 3 cut(s) 325, 360, 485
BlpI GCTNAGC 2 cut(s) 639, 774
BlsI GCNGC 3 cut(s) 326, 361, 486
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 4 cut(s) 166, 704, 839, 964
BpiI GAAGAC 7 cut(s) 533, 587, 713, 722, 848, 857, 893
Bpu1102I GCTNAGC 2 cut(s) 639, 774
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 4 cut(s) 564, 591, 726, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 767, 920
BseLI CCNNNNNNNGG 3 cut(s) 632, 767, 920
BseMII CTCAG 4 cut(s) 285, 426, 653, 788
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 336, 371, 471
BseYI CCCAGC 1 cut(s) 416
BshFI GGCC 3 cut(s) 167, 350, 971
BshNI GGYRCC 2 cut(s) 702, 837
BsiHKAI GWGCWC 2 cut(s) 640, 775
BsiSI CCGG 4 cut(s) 563, 590, 725, 860
BslFI GGGAC 2 cut(s) 579, 959
BslI CCNNNNNNNGG 3 cut(s) 632, 767, 920
BsmFI GGGAC 2 cut(s) 579, 959
BsnI GGCC 3 cut(s) 167, 350, 971
Bsp1286I GDGCHC 3 cut(s) 640, 775, 967
Bsp1720I GCTNAGC 2 cut(s) 639, 774
BspACI CCGC 1 cut(s) 928
BspANI GGCC 3 cut(s) 167, 350, 971
BspCNI CTCAG 4 cut(s) 284, 425, 652, 787
BspLI GGNNCC 4 cut(s) 166, 704, 839, 964
BspT107I GGYRCC 2 cut(s) 702, 837
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 113, 341
BstDEI CTNAG 6 cut(s) 271, 412, 639, 690, 774, 825
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstMWI GCNNNNNNNGC 2 cut(s) 356, 442
BstNSI RCATGY 2 cut(s) 123, 287
BstV1I GCAGC 3 cut(s) 336, 371, 471
BstV2I GAAGAC 7 cut(s) 533, 587, 713, 722, 848, 857, 893
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 167, 350, 971
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 337
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 553
CviAII CATG 3 cut(s) 68, 120, 284
DdeI CTNAG 6 cut(s) 271, 412, 639, 690, 774, 825
DrdI GACNNNNNNGTC 4 cut(s) 537, 573, 591, 897
DseDI GACNNNNNNGTC 4 cut(s) 537, 573, 591, 897
Ecl136II GAGCTC 2 cut(s) 638, 773
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 3 cut(s) 640, 775, 967
Eco53kI GAGCTC 2 cut(s) 638, 773
EcoICRI GAGCTC 2 cut(s) 638, 773
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 3 cut(s) 640, 775, 967
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 8 cut(s) 20, 69, 98, 109, 121, 285, 457, 518
FaqI GGGAC 2 cut(s) 579, 959
FatI CATG 3 cut(s) 67, 119, 283
FblI GTMKAC 2 cut(s) 108, 577
Fnu4HI GCNGC 3 cut(s) 325, 360, 485
FriOI GRGCYC 3 cut(s) 640, 775, 967
Fsp4HI GCNGC 3 cut(s) 325, 360, 485
FspBI CTAG 2 cut(s) 38, 147
GlaI GCGC 1 cut(s) 475
GluI GCNGC 3 cut(s) 325, 360, 485
GsaI CCCAGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 3 cut(s) 167, 350, 971
HapII CCGG 4 cut(s) 563, 590, 725, 860
HhaI GCGC 1 cut(s) 476
Hin1II CATG 3 cut(s) 71, 123, 287
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HpaII CCGG 4 cut(s) 563, 590, 725, 860
HphI GGTGA 2 cut(s) 7, 489
Hpy166II GTNNAC 4 cut(s) 109, 259, 332, 578
Hpy188I TCNGA 4 cut(s) 635, 670, 770, 805
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 4 cut(s) 109, 259, 332, 578
HpyAV CCTTC 6 cut(s) 35, 63, 70, 283, 293, 439
HpyCH4III ACNGT 2 cut(s) 113, 341
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 442
HpyF3I CTNAG 6 cut(s) 271, 412, 639, 690, 774, 825
Hsp92II CATG 3 cut(s) 71, 123, 287
HspAI GCGC 1 cut(s) 474
LmnI GCTCC 3 cut(s) 635, 770, 962
Lsp1109I GCAGC 3 cut(s) 336, 371, 471
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 2 cut(s) 38, 147
MaeIII GTNAC 1 cut(s) 458
MhlI GDGCHC 3 cut(s) 640, 775, 967
MluCI AATT 4 cut(s) 294, 501, 525, 939
MnlI CCTC 7 cut(s) 64, 178, 361, 389, 505, 693, 828
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 4 cut(s) 563, 590, 725, 860
MwoI GCNNNNNNNGC 2 cut(s) 356, 442
NciI CCSGG 4 cut(s) 564, 591, 726, 861
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 4 cut(s) 166, 704, 839, 964
NspI RCATGY 2 cut(s) 123, 287
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 2 cut(s) 630, 765
PkrI GCNGC 3 cut(s) 326, 361, 486
PscI ACATGT 1 cut(s) 283
Psp124BI GAGCTC 2 cut(s) 640, 775
PspFI CCCAGC 1 cut(s) 416
PspN4I GGNNCC 4 cut(s) 166, 704, 839, 964
PspPI GGNCC 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 416
SacI GAGCTC 2 cut(s) 640, 775
SatI GCNGC 3 cut(s) 325, 360, 485
Sau96I GGNCC 1 cut(s) 165
SduI GDGCHC 3 cut(s) 640, 775, 967
SexAI ACCWGGT 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 4 cut(s) 294, 501, 525, 939
SsiI CCGC 1 cut(s) 928
SspMI CTAG 2 cut(s) 38, 147
SstI GAGCTC 2 cut(s) 640, 775
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 113, 341
TaqI TCGA 1 cut(s) 138
TasI AATT 4 cut(s) 294, 501, 525, 939
TfiI GAWTC 2 cut(s) 630, 765
TscAI CASTG 2 cut(s) 334, 344
TseI GCWGC 3 cut(s) 324, 359, 484
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspRI CASTG 2 cut(s) 334, 344
XceI RCATGY 2 cut(s) 123, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 108, 577
XspI CTAG 2 cut(s) 38, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.