RLG00000021493

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001665
Physical Location & Seq
Reverse (-)
75888115 .. 75889244
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021493

Sequence Viewer

Length: 999 bp
ATGTCTTGGTTTCTAACCATATTCCTTCTCATTAGTCTAGCATTTATCACTCCTTCAGAGGCTAACCATGAGGAGAAGGTTCAATCTGCCGTTGTTATAGGCAAAGTATACTGTGATACATGCTTCCAAGACGGGTTCGCGAAAACTAGCCACTTCATTTCTGGGGCCTCTGTTGGTGTGGAGTGCAAAGATGAGAGTTCATCGAAACCAAGTTTTCAAGCACAAGTGAAAACAGATAACCAAGGAGTGTTCAAAGTCCACTTGCCTTTCTCAGTAAGCAAACATGTAAAGGAAATTGATGGGTGTTCTGTGAAGCTAATCCGCAGCAGTGAACCCCACTGTGCTGTGGCCTCAACAGCAGCTTCATCTTCGCTTCCCCTCAAGTCCAGGAAGCAAGGAACACACATTTTCTCAGCTGGGTTTTTCGCCTTCAAGCCCCTAAAGCAAGGCAACCTATGTAACCAAAAATCAAGCGCCAACAAGCTGCCATTTTCCTCACCAATTCAACAACAAGACTTGTTGGGAATTGGACTCCCAGGTCTTCCAGGACTACCAGGTTTGCCGGGACTACCAGGTCTACCTGGACTTCCGGGTCTTCCAGGACTCCCAGGACTTCCAGGAATTGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACCAAAACTGCTACTTCTAAGGTAGAGAGGCACCTAATTGGCCTGGGTCTTCCGGGACTGCCTGGACTTCCAGGTCTTCCCGGACTCCCGGGTCTTCCTGGACTTCCAGGAATCGGAGCTCAGCCAGAGCAAATACCAGAGTCCAAATCTGAAACAAAAACTGCTATTTCTAAGGTAGAGAGGCACCTACTTGTCCTGGGTCTTCCGGGTCTTCCAGGACTCCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATCGGAGCCCGCACAGAAAAAATTACAGAGAAAAATGATGATGGAGCCCAGGTCGTCCCACTTGCTTCTTCTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

333

Amino Acids

34.37

Weight (kDa)

8.67

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 5e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 6 cut(s) 537, 573, 591, 735, 753, 897
AccB1I GGYRCC 2 cut(s) 693, 846
AccB7I CCANNNNNTGG 1 cut(s) 623
AccI GTMKAC 2 cut(s) 108, 577
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 322, 928
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 3 cut(s) 623, 776, 920
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 5 cut(s) 83, 218, 253, 433, 506
AluBI AGCT 6 cut(s) 316, 362, 416, 484, 629, 782
AluI AGCT 6 cut(s) 316, 362, 416, 484, 629, 782
Alw21I GWGCWC 2 cut(s) 631, 784
Ama87I CYCGRG 1 cut(s) 751
AoxI GGCC 3 cut(s) 165, 348, 703
ApeKI GCWGC 3 cut(s) 324, 359, 484
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 7 cut(s) 564, 591, 717, 744, 752, 753, 870
AsuHPI GGTGA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 751
BanI GGYRCC 2 cut(s) 693, 846
BanII GRGCYC 4 cut(s) 631, 784, 928, 967
BbsI GAAGAC 8 cut(s) 533, 587, 704, 731, 749, 857, 866, 893
Bbv12I GWGCWC 2 cut(s) 631, 784
BbvI GCAGC 3 cut(s) 336, 371, 471
BccI CCATC 2 cut(s) 293, 953
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 7 cut(s) 564, 591, 717, 744, 752, 753, 870
BfaI CTAG 2 cut(s) 38, 147
BfoI RGCGCY 1 cut(s) 477
BisI GCNGC 3 cut(s) 325, 360, 485
BlpI GCTNAGC 2 cut(s) 630, 783
BlsI GCNGC 3 cut(s) 326, 361, 486
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 5 cut(s) 166, 695, 848, 925, 964
BpiI GAAGAC 8 cut(s) 533, 587, 704, 731, 749, 857, 866, 893
Bpu1102I GCTNAGC 2 cut(s) 630, 783
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 7 cut(s) 564, 591, 717, 744, 752, 753, 870
BsaJI CCNNGG 9 cut(s) 241, 535, 607, 706, 751, 859, 886, 895, 966
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 776, 920
BseDI CCNNGG 9 cut(s) 241, 535, 607, 706, 751, 859, 886, 895, 966
BseLI CCNNNNNNNGG 3 cut(s) 623, 776, 920
BseMII CTCAG 4 cut(s) 285, 426, 644, 797
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 3 cut(s) 336, 371, 471
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 3 cut(s) 167, 350, 705
BshNI GGYRCC 2 cut(s) 693, 846
BsiHKAI GWGCWC 2 cut(s) 631, 784
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 6 cut(s) 563, 590, 716, 744, 752, 869
BslFI GGGAC 3 cut(s) 579, 732, 959
BslI CCNNNNNNNGG 3 cut(s) 623, 776, 920
BsmFI GGGAC 3 cut(s) 579, 732, 959
BsnI GGCC 3 cut(s) 167, 350, 705
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 4 cut(s) 631, 784, 928, 967
Bsp1720I GCTNAGC 2 cut(s) 630, 783
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 2 cut(s) 322, 928
BspANI GGCC 3 cut(s) 167, 350, 705
BspCNI CTCAG 4 cut(s) 284, 425, 643, 796
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 5 cut(s) 166, 695, 848, 925, 964
BspT107I GGYRCC 2 cut(s) 693, 846
BssECI CCNNGG 9 cut(s) 241, 535, 607, 706, 751, 859, 886, 895, 966
BssNAI GTATAC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 113, 341
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 6 cut(s) 271, 412, 630, 681, 783, 834
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstMWI GCNNNNNNNGC 2 cut(s) 356, 442
BstNSI RCATGY 2 cut(s) 123, 287
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 336, 371, 471
BstV2I GAAGAC 8 cut(s) 533, 587, 704, 731, 749, 857, 866, 893
BstZ17I GTATAC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 167, 350, 705
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 337
BtuMI TCGCGA 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 928
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 165
Cfr9I CCCGGG 1 cut(s) 751
CsiI ACCWGGT 2 cut(s) 553, 571
CviAII CATG 3 cut(s) 68, 120, 284
DdeI CTNAG 6 cut(s) 271, 412, 630, 681, 783, 834
DrdI GACNNNNNNGTC 6 cut(s) 537, 573, 591, 735, 753, 897
DseDI GACNNNNNNGTC 6 cut(s) 537, 573, 591, 735, 753, 897
Ecl136II GAGCTC 2 cut(s) 629, 782
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 4 cut(s) 631, 784, 928, 967
Eco53kI GAGCTC 2 cut(s) 629, 782
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 751
EcoICRI GAGCTC 2 cut(s) 629, 782
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 4 cut(s) 631, 784, 928, 967
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 7 cut(s) 20, 69, 98, 109, 121, 285, 457
FaqI GGGAC 3 cut(s) 579, 732, 959
FatI CATG 3 cut(s) 67, 119, 283
FauI CCCGC 1 cut(s) 935
FblI GTMKAC 2 cut(s) 108, 577
Fnu4HI GCNGC 3 cut(s) 325, 360, 485
FriOI GRGCYC 4 cut(s) 631, 784, 928, 967
Fsp4HI GCNGC 3 cut(s) 325, 360, 485
FspBI CTAG 2 cut(s) 38, 147
GlaI GCGC 1 cut(s) 475
GluI GCNGC 3 cut(s) 325, 360, 485
GsaI CCCAGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 3 cut(s) 167, 350, 705
HapII CCGG 6 cut(s) 563, 590, 716, 744, 752, 869
HhaI GCGC 1 cut(s) 476
Hin1II CATG 3 cut(s) 71, 123, 287
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 9 cut(s) 531, 603, 650, 747, 774, 803, 882, 891, 918
HpaII CCGG 6 cut(s) 563, 590, 716, 744, 752, 869
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 4 cut(s) 109, 259, 332, 578
Hpy188I TCNGA 5 cut(s) 58, 661, 779, 814, 923
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 4 cut(s) 109, 259, 332, 578
HpyAV CCTTC 4 cut(s) 35, 63, 70, 439
HpyCH4III ACNGT 2 cut(s) 113, 341
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 442
HpyF3I CTNAG 6 cut(s) 271, 412, 630, 681, 783, 834
Hsp92II CATG 3 cut(s) 71, 123, 287
HspAI GCGC 1 cut(s) 474
LmnI GCTCC 4 cut(s) 626, 779, 923, 962
Lsp1109I GCAGC 3 cut(s) 336, 371, 471
MabI ACCWGGT 2 cut(s) 553, 571
MaeI CTAG 2 cut(s) 38, 147
MaeIII GTNAC 1 cut(s) 458
MhlI GDGCHC 4 cut(s) 631, 784, 928, 967
MluCI AATT 6 cut(s) 294, 501, 525, 621, 699, 939
MlyI GAGTC 7 cut(s) 525, 597, 659, 741, 812, 876, 885
MnlI CCTC 8 cut(s) 52, 64, 178, 361, 389, 505, 684, 837
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 6 cut(s) 563, 590, 716, 744, 752, 869
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 356, 442
NciI CCSGG 7 cut(s) 564, 591, 717, 744, 752, 753, 870
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 5 cut(s) 166, 695, 848, 925, 964
NruI TCGCGA 1 cut(s) 140
NspI RCATGY 2 cut(s) 123, 287
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 2 cut(s) 774, 918
PflMI CCANNNNNTGG 1 cut(s) 623
PkrI GCNGC 3 cut(s) 326, 361, 486
PleI GAGTC 7 cut(s) 525, 597, 658, 741, 811, 876, 885
PpsI GAGTC 7 cut(s) 525, 597, 658, 741, 811, 876, 885
PscI ACATGT 1 cut(s) 283
Psp124BI GAGCTC 2 cut(s) 631, 784
PspFI CCCAGC 1 cut(s) 416
PspN4I GGNNCC 5 cut(s) 166, 695, 848, 925, 964
PspPI GGNCC 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 416
RruI TCGCGA 1 cut(s) 140
SacI GAGCTC 2 cut(s) 631, 784
SatI GCNGC 3 cut(s) 325, 360, 485
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 7 cut(s) 525, 597, 659, 741, 812, 876, 885
SduI GDGCHC 4 cut(s) 631, 784, 928, 967
SexAI ACCWGGT 2 cut(s) 553, 571
SmaI CCCGGG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 6 cut(s) 294, 501, 525, 621, 699, 939
SsiI CCGC 2 cut(s) 322, 928
SspMI CTAG 2 cut(s) 38, 147
SstI GAGCTC 2 cut(s) 631, 784
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 113, 341
TaqI TCGA 1 cut(s) 203
TasI AATT 6 cut(s) 294, 501, 525, 621, 699, 939
TfiI GAWTC 2 cut(s) 774, 918
TscAI CASTG 2 cut(s) 334, 344
TseI GCWGC 3 cut(s) 324, 359, 484
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspMI CCCGGG 1 cut(s) 751
TspRI CASTG 2 cut(s) 334, 344
Van91I CCANNNNNTGG 1 cut(s) 623
XceI RCATGY 2 cut(s) 123, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmaI CCCGGG 1 cut(s) 751
XmiI GTMKAC 2 cut(s) 108, 577
XspI CTAG 2 cut(s) 38, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.